Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,830,097 – 11,830,187 |
Length | 90 |
Max. P | 0.665743 |
Location | 11,830,097 – 11,830,187 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 76.64 |
Mean single sequence MFE | -32.29 |
Consensus MFE | -24.01 |
Energy contribution | -24.98 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.26 |
Mean z-score | -0.97 |
Structure conservation index | 0.74 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665743 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11830097 90 - 22224390 -----------------------UCCUUGAACUCUCACGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUUGGAUCCAUCCACAUGUCGGAGGAGCGGACUAGCUUC -----------------------..............(((((.......)))))((((((((((.((((....)))).).(((.(((.......))))))))))))).))... ( -28.70) >DroGri_CAF1 4755 93 - 1 --------------------AAAAGUUUGCUUUAUUCAAAAGAUGUGGACUGUGGACCAUUGCCGGAAUUGAAAUUUGGUUCGAUACAUCUGUCCGAGGAGCGCACCAGCUAU --------------------....((.((((((.......(((((((.....(((((((.................))))))).)))))))......)))))).))....... ( -20.15) >DroSec_CAF1 6046 97 - 1 ----------------AUCGAAAUCCUUGAACUCUCCCGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUUGGUUCCAUCCACAUGUCGGAGGAGCGGACGAGCUUC ----------------.(((...(((.....(((..(((.(.(((((((....(((.....)))(((((..(...)..))))).))))))).))))..))).))))))..... ( -36.10) >DroSim_CAF1 6000 97 - 1 ----------------AUCGAAAUCCUUGAACUCUCCCGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUUGGCUCCAUCCACAUGUCGGAGGAGCGGACGAGCUUC ----------------.(((...(((.....(((..(((.(.(((((((....(((.....)))(((((..(...)..))))).))))))).))))..))).))))))..... ( -38.50) >DroEre_CAF1 7423 113 - 1 UUUGAUUGCUUCUCACAACGAAAUCCUUGAAUUCCCCCGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUCGGAUCCAUCCACAUGUCGGAGGAGCGGACGAGCUUC ((((.(((((((((.(((.(....).)))........((.(.(((((((....(((.....)))(((.(((.....))).))).))))))).)))))))))))).)))).... ( -37.40) >DroYak_CAF1 5889 85 - 1 --------------------------UU--AAUCUUCCGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUUGGCUCCAUUCACAUGUCCGAGGAGCGGACGAGCUUC --------------------------..--..((.(((((..(((((((....(((.....)))(((((..(...)..))))).))))))).((....))))))).))..... ( -32.90) >consensus ____________________AAAUCCUUGAACUCUCCCGCAGAUGUGGACUGCGGCAGUCUGCCGGAGCUGAAGUUUGGAUCCAUCCACAUGUCGGAGGAGCGGACGAGCUUC ....................................(((.(.(((((((....(((.....)))((((((((...)))))))).))))))).)))).(((((......))))) (-24.01 = -24.98 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:54 2006