Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,318,157 – 1,318,277 |
Length | 120 |
Max. P | 0.690904 |
Location | 1,318,157 – 1,318,277 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.50 |
Mean single sequence MFE | -47.36 |
Consensus MFE | -37.46 |
Energy contribution | -39.18 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.16 |
Mean z-score | -1.62 |
Structure conservation index | 0.79 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1318157 120 - 22224390 UGUGGCGGUGAGAUGGAACCGUUGGCUCUCAAACAGGGUCUGGAGAAUAGGAGUAGGCGUACCGCUUCCCACGAAGAAGCUGUGGGCAGUGGUGAUGCCGAGGAGCAGUACAUCCAUGAG ...((((((........))))))((((((.....))))))((((......(..(.(((((((((((.((((((.......)))))).)))))).)))))...)..)......)))).... ( -42.90) >DroSec_CAF1 54319 120 - 1 UGUGGCGGUGAGACGGAACCGCUGGCCCUCAAACAGGGUCUGCAGAAGAGGAGUAGGCGUACCGCUGCCCAGGAGGAAGCUGUGGGCAGUGGUGAUGCCGAGGAGCAGUACAUCCACGAG .((((((((........)))))..((((((........(((.....)))......((((((((((((((((.(.(....)).))))))))))).))))))))).))........)))... ( -52.50) >DroSim_CAF1 42291 120 - 1 UGUGGCGGUGAGACGGAACCGCUGGCCCUCAAACAGGGUGUGCAGAAGAGGAGUAGGCGUACCGCUGCCCAGGAGGAAGCUGUGGGCAGUGGUGAUGCCGAGGAGCAGUAUAUCCACGAG .((((((((........)))))..((((((..........(((.........)))((((((((((((((((.(.(....)).))))))))))).))))))))).))........)))... ( -50.80) >DroEre_CAF1 52505 120 - 1 UGUGGCGGUGAGACGGAACCGCUGGCUCUAACACAGGGUCAGGAAAAGAGGAGCAGGCGAACGGCUGCCCAGGAGAAAGCUGUGGGCAGUAGGGAUUCCGAGGAGCAGUACAUCCACGAG .((((..(((...(((((((.((((((((.....))))))))...................(.((((((((.(.......).)))))))).))).)))))........)))..))))... ( -39.00) >DroYak_CAF1 46291 120 - 1 AGUGGCGGUGCGACGGAGCCGCUGGCUCUGAAACAGGGCCUGGAGCAGCGGAGCAGACGAACGGCUGCCCGGGAGGACGCUGUGGGCCAUGGGGAUCCCGAGGAGCAGUACAUCCACGAG .((((..((((..(((((((...)))))))...((.(((((...((((((..((((.(....).))))((....)).))))))))))).))((....))........))))..))))... ( -51.60) >consensus UGUGGCGGUGAGACGGAACCGCUGGCUCUCAAACAGGGUCUGGAGAAGAGGAGUAGGCGUACCGCUGCCCAGGAGGAAGCUGUGGGCAGUGGUGAUGCCGAGGAGCAGUACAUCCACGAG ...((((((........))))))((((((.....))))))...............((((((((((((((((.(.......).))))))))))).)))))..(((........)))..... (-37.46 = -39.18 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:47 2006