Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,823,111 – 11,823,220 |
Length | 109 |
Max. P | 0.999396 |
Location | 11,823,111 – 11,823,220 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.02 |
Mean single sequence MFE | -13.47 |
Consensus MFE | -13.93 |
Energy contribution | -13.60 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.16 |
Mean z-score | -0.72 |
Structure conservation index | 1.03 |
SVM decision value | 3.57 |
SVM RNA-class probability | 0.999396 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11823111 109 + 22224390 CUAGGAUUAAACACGCAAACAUUACCUGUAUUAUUGACUAAUACGAACCGUUAUAAAAUAAGCCAAUUAGGUAACAUAAAUAAAGUCCAUUGGUUGGCUAAAACAAAAU ..........................(((((((.....)))))))...............((((((((((...((.........))...)))))))))).......... ( -14.10) >DroSec_CAF1 8366 87 + 1 ----------------------UACCUAUAUUAUUGACUAAUAUGAACCGCCAUAAAAUAAGCCAAUUAGGUAACAUAAAUAAAGUCCACUGCUUGGCUGACGCAAAAC ----------------------....(((((((.....)))))))...............((((((.(((...((.........))...))).)))))).......... ( -11.20) >DroSim_CAF1 9036 87 + 1 ----------------------UACCUGUAUUAUUGACUAAUAUGAACCGCCAUAAAAUAAGCCAAUUAGGUAACAUAAAUAAAGUCCACUGGUUGGCUGACGCAAAAC ----------------------....(((............((((......)))).....((((((((((...((.........))...))))))))))...))).... ( -15.10) >consensus ______________________UACCUGUAUUAUUGACUAAUAUGAACCGCCAUAAAAUAAGCCAAUUAGGUAACAUAAAUAAAGUCCACUGGUUGGCUGACGCAAAAC ..........................(((((((.....)))))))...............((((((((((...((.........))...)))))))))).......... (-13.93 = -13.60 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:49 2006