Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,822,239 – 11,822,359 |
Length | 120 |
Max. P | 0.633296 |
Location | 11,822,239 – 11,822,359 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.17 |
Mean single sequence MFE | -45.42 |
Consensus MFE | -43.92 |
Energy contribution | -43.88 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.13 |
Structure conservation index | 0.97 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11822239 120 - 22224390 ACAAGUGCCGGCAGCAGUGCGAGAGCAUGGGAGCCAGUAGCUAUCGAUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGCCUCAAUUAUGGAAUCAACGAGAGUCGCUGCC .........((((((.((((....))))...........(((.(((.((((((((..(..(((((.......)))))(((((...)))))....)..)))))))).))).))).)))))) ( -45.30) >DroSec_CAF1 7523 120 - 1 ACAAGUGCCGGCAGCAAUGCGAGAGCAUGGGAGCCAGUAGCUAUCGAUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGCCUCAAUUACGGAAUCAACGAGAGUCGCUGCC .........((((((.((((....))))...........(((.(((.(((((((......(((((.......)))))(((((...)))))........))))))).))).))).)))))) ( -44.30) >DroSim_CAF1 8180 120 - 1 ACAAGUGCCGGCAGCAAUGCGAGAGCAUGGGAGCCAGUAGCUAUCGAUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGCCUCAAUUACGGAAUCAACGAGAGUCGCUGCC .........((((((.((((....))))...........(((.(((.(((((((......(((((.......)))))(((((...)))))........))))))).))).))).)))))) ( -44.30) >DroEre_CAF1 3557 120 - 1 ACAAGUGCCGGCAGCAGUGCGAGAGCAUGGGCGCCAGUAGCUAUCGCUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGUCUCAACUACGGCAUCAACGAGAGUCGCUGCC ...(((((((((....((((....))))..((((..(((((..((((((....)).).)))..)))))..))))))))))((((....)))).)))..((((.(.((....)).).)))) ( -47.00) >DroYak_CAF1 7623 120 - 1 ACAAGUGCCGGCAGCAGUGCGAGAGCAUGGGCGCCAGUAGCUAUCGAUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGCCUCAACUACGGAAUCAACGAGAGUCGCUGCC ......((.(((.((.((((....))))..)))))((..(((.(((.(((((((......(((((.......)))))(((((...)))))........))))))).))).)))..)))). ( -46.20) >consensus ACAAGUGCCGGCAGCAGUGCGAGAGCAUGGGAGCCAGUAGCUAUCGAUGGUUCCACGACGGAUGCUGCGAGUGCGUCGGCGAGAAUUGCCUCAAUUACGGAAUCAACGAGAGUCGCUGCC .........((((((.((((....))))...........(((.(((.(((((((.(((((.((.......)).)))))..(((......)))......))))))).))).))).)))))) (-43.92 = -43.88 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:48 2006