Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,813,572 – 11,813,692 |
Length | 120 |
Max. P | 0.932320 |
Location | 11,813,572 – 11,813,692 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.17 |
Mean single sequence MFE | -26.21 |
Consensus MFE | -24.98 |
Energy contribution | -25.48 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.20 |
Structure conservation index | 0.95 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11813572 120 + 22224390 AACGAAAAAAUCCAUGAUGUUCCAAAUAUUCCUGAGAUAGGAGUGUUUAUGCAGAACAAGCCCUAAGGCGAGGAUCUUGAGCGACGCUUCUACACAGAAAAUGCAUAAAAAAUAGGCCUC ..((..((.((((....(((((.(((((((((((...))))))))))).....))))).(((....)))..)))).))...))..((((((....))))...))................ ( -24.60) >DroVir_CAF1 25715 120 + 1 AACGAAAAAAUCCAUGAUGUUCCAAAUAUUCCUGAGAUAGGAGUGUUUAUGCAGAACAAGCCCUAAGGCAAGGAUCUUGAGCGAUGCUUCUACACAGAAAAUGCAUAAAAAAUAGGCCUC ..((..((.((((....(((((.(((((((((((...))))))))))).....))))).(((....)))..)))).))...))((((((((....))))...)))).............. ( -26.40) >DroPse_CAF1 10303 120 + 1 AACGAAAAAAUCCAUGAUGUUCCAAAUAUUCCUGAGAUAGGAGUGUUUAUGCAGAACAAGCCCUAGGGCGAGGAUCUUGAGCGAUGCUUCUACACAGAAAAUGCAUAAAAAAUAGGCCUC .................(((((.(((((((((((...))))))))))).....))))).(((....)))((((.(((......((((((((....))))...)))).......))))))) ( -28.72) >DroGri_CAF1 21788 120 + 1 AACGAAAAAAUCCAUGAUGUUCCAAAUAUUCCUGAGAUAGGAGUGUUUAUGCAGAACAAGCCCUAGGGCAAGAAUCUUGAGCGAUGCUUCUACACAGAAAAUGCAUAAAAAAUAGGCCUC ...........((....(((((.(((((((((((...)))))))))))...........(((....))).........)))))((((((((....))))...))))........)).... ( -23.60) >DroMoj_CAF1 22231 120 + 1 AACGAAAAAAUCCAUGAUGUUCCAAAUAUUCCUGAGAUAGGAGUGUUUAUGCAGAACAAGCCCUAAGGCAAGGAUCUUGAGCGAUGCUUCUACACAGAAAAUGCAUAAAAAAUAGGCCUC ..((..((.((((....(((((.(((((((((((...))))))))))).....))))).(((....)))..)))).))...))((((((((....))))...)))).............. ( -26.40) >DroPer_CAF1 16478 120 + 1 AACGAAAAAAUCCAUGAUGUUCCAAAUAUUCCUGAGAUAGGAGUGCUUAUGCAGAACAAGCCCUAGGGCGAGGAUCUUGAGCGAUGCUUCUACACAGAAAAUGCAUAAAAAAUAGGCCUC .................(((((.....(((((((...)))))))((....)).))))).(((....)))((((.(((......((((((((....))))...)))).......))))))) ( -27.52) >consensus AACGAAAAAAUCCAUGAUGUUCCAAAUAUUCCUGAGAUAGGAGUGUUUAUGCAGAACAAGCCCUAAGGCAAGGAUCUUGAGCGAUGCUUCUACACAGAAAAUGCAUAAAAAAUAGGCCUC ..((..((.((((....(((((.(((((((((((...))))))))))).....))))).(((....)))..)))).))...))((((((((....))))...)))).............. (-24.98 = -25.48 + 0.50)
Location | 11,813,572 – 11,813,692 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.17 |
Mean single sequence MFE | -26.28 |
Consensus MFE | -25.95 |
Energy contribution | -25.82 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.03 |
Mean z-score | -0.65 |
Structure conservation index | 0.99 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.579540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11813572 120 - 22224390 GAGGCCUAUUUUUUAUGCAUUUUCUGUGUAGAAGCGUCGCUCAAGAUCCUCGCCUUAGGGCUUGUUCUGCAUAAACACUCCUAUCUCAGGAAUAUUUGGAACAUCAUGGAUUUUUUCGUU ((.((.....(((((((((.....))))))))))).))....(((((((..(((....))).(((((((.(((.....((((.....)))).))).)))))))....)))))))...... ( -26.50) >DroVir_CAF1 25715 120 - 1 GAGGCCUAUUUUUUAUGCAUUUUCUGUGUAGAAGCAUCGCUCAAGAUCCUUGCCUUAGGGCUUGUUCUGCAUAAACACUCCUAUCUCAGGAAUAUUUGGAACAUCAUGGAUUUUUUCGUU (((.(....((((((((((.....))))))))))....))))(((((((..(((....))).(((((((.(((.....((((.....)))).))).)))))))....)))))))...... ( -25.60) >DroPse_CAF1 10303 120 - 1 GAGGCCUAUUUUUUAUGCAUUUUCUGUGUAGAAGCAUCGCUCAAGAUCCUCGCCCUAGGGCUUGUUCUGCAUAAACACUCCUAUCUCAGGAAUAUUUGGAACAUCAUGGAUUUUUUCGUU (((.(....((((((((((.....))))))))))....))))(((((((..(((....))).(((((((.(((.....((((.....)))).))).)))))))....)))))))...... ( -27.00) >DroGri_CAF1 21788 120 - 1 GAGGCCUAUUUUUUAUGCAUUUUCUGUGUAGAAGCAUCGCUCAAGAUUCUUGCCCUAGGGCUUGUUCUGCAUAAACACUCCUAUCUCAGGAAUAUUUGGAACAUCAUGGAUUUUUUCGUU (((.(....((((((((((.....))))))))))....))))(((((((..(((....))).(((((((.(((.....((((.....)))).))).)))))))....)))))))...... ( -23.80) >DroMoj_CAF1 22231 120 - 1 GAGGCCUAUUUUUUAUGCAUUUUCUGUGUAGAAGCAUCGCUCAAGAUCCUUGCCUUAGGGCUUGUUCUGCAUAAACACUCCUAUCUCAGGAAUAUUUGGAACAUCAUGGAUUUUUUCGUU (((.(....((((((((((.....))))))))))....))))(((((((..(((....))).(((((((.(((.....((((.....)))).))).)))))))....)))))))...... ( -25.60) >DroPer_CAF1 16478 120 - 1 GAGGCCUAUUUUUUAUGCAUUUUCUGUGUAGAAGCAUCGCUCAAGAUCCUCGCCCUAGGGCUUGUUCUGCAUAAGCACUCCUAUCUCAGGAAUAUUUGGAACAUCAUGGAUUUUUUCGUU (((.(....((((((((((.....))))))))))....))))(((((((..(((....))).((((((((....))..((((.....))))......))))))....)))))))...... ( -29.20) >consensus GAGGCCUAUUUUUUAUGCAUUUUCUGUGUAGAAGCAUCGCUCAAGAUCCUCGCCCUAGGGCUUGUUCUGCAUAAACACUCCUAUCUCAGGAAUAUUUGGAACAUCAUGGAUUUUUUCGUU (((.(....((((((((((.....))))))))))....))))(((((((..(((....))).(((((((.(((.....((((.....)))).))).)))))))....)))))))...... (-25.95 = -25.82 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:43 2006