Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,811,385 – 11,811,503 |
Length | 118 |
Max. P | 0.678115 |
Location | 11,811,385 – 11,811,503 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.40 |
Mean single sequence MFE | -30.33 |
Consensus MFE | -28.90 |
Energy contribution | -28.23 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.12 |
Mean z-score | -0.87 |
Structure conservation index | 0.95 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11811385 118 - 22224390 -ACAGAUUCAUGACACAGUACCCACAAAUAGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUUCC-U -..........(((((.((....))....((((((.(.((((.(((((((....)))))........)).)))).)))))))........))))).((((((.((....)).))))))-. ( -30.10) >DroVir_CAF1 21954 118 - 1 -ACAGAUUCAUGACACAGUACCCACAAAUGGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUCAU-A -....(((((((((((.((....))....((((((.(.((((.(((((((....)))))........)).)))).)))))))........))))).((....))..))))))......-. ( -29.70) >DroGri_CAF1 19206 119 - 1 -ACAGAUUCAUGACACAGUACCCACAAAUGGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUCCUUA -....(((((((((((.((....))....((((((.(.((((.(((((((....)))))........)).)))).)))))))........))))).((....))..))))))........ ( -29.70) >DroWil_CAF1 18783 118 - 1 -ACAGAUUCAUGACACAGUACCCACAAAUAGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGUUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUACU-A -....(((((((((((.((....))....((((((..(((....)))...(((((...(((...)))..)))))..))))))........))))).((....))..))))))......-. ( -29.90) >DroMoj_CAF1 18424 118 - 1 -ACAGAUUCAUGACACAGUACCCACAAAUGGGGCCCGAGGUAGAUCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUCAU-A -....(((((((((((....((((....))))((.((((.....((((((....))))))....)))).))((....))...........))))).((....))..))))))......-. ( -30.50) >DroAna_CAF1 14788 119 - 1 AACAGAUUCAUGACACAGUACCCACAAAUAGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCCUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUUAU-A (((..(((((((((((.((....))...(((((.(((.((((.(((((((....)))))........)).)))).))).)))))......))))).((....))..)))))).)))..-. ( -32.10) >consensus _ACAGAUUCAUGACACAGUACCCACAAAUAGGGCCCGAGGUAGACCUAAGAACACUUAGAGCCAUUCGUGUGCUACGGCCCUUAAAAUUAGUGUCUGGAAUUCCUAGUGAGUAGUCAU_A .....(((((((((((.((....))...(((((.(((.((((.(((((((....)))))........)).)))).))).)))))......))))).((....))..))))))........ (-28.90 = -28.23 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:41 2006