Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,798,226 – 11,798,332 |
Length | 106 |
Max. P | 0.573480 |
Location | 11,798,226 – 11,798,332 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 87.63 |
Mean single sequence MFE | -30.85 |
Consensus MFE | -21.36 |
Energy contribution | -22.24 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -1.61 |
Structure conservation index | 0.69 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11798226 106 + 22224390 UCAUUCGUAAUCGAGAUCG--------AUCAAUUUCGC----GAUCGAUGUGGAAUGCAUUUGUCGUUUUCGUACACGGAUGUGUGUGUGGAUGGACAUUCAGGUGCAGUUGUUAUUG ..........((.(.((((--------(((........----))))))).).)).((((((((..(((((((((((((....))))))))))..)))...)))))))).......... ( -29.50) >DroSec_CAF1 2053 103 + 1 UCAUUCGGAAUCGAGUUCG--------AUCGAUUUCGA----GAUCGAUGUGGAAUGCAUUUGUCGUUUU-GUACACGGAUGUG--UGUGGAUGGACAUUCAGGUGCAGUUGUUUUUG ....((((((((((.....--------.))))))))))----(((.(((((.....))))).)))...((-((((..((((((.--(......).))))))..))))))......... ( -31.10) >DroSim_CAF1 2908 103 + 1 UCAUUCGGAAUCGAGUUCG--------AUCGAUUUCGA----GAUCGAUGUGGAAUGCAUUUGUCGUUUU-GUACACGGAUGUG--UGUGGAUGGACAUUCAGGUGCAGUUGUUAUUG ...(((((((((((.....--------.))))))))))----)..(((((.....((((((((((..((.-.(((((....)))--))..))..))))....)))))).....))))) ( -33.20) >DroEre_CAF1 2035 112 + 1 UCAUUCGGAAUCGGGAUCGGGAUCGGAAUCGAAAUCGAAAUCGAUCGAUGUGGAAUGCGUUUGUCGUUUU-GUACACGGAUGUG--UGUGGAUGGACAUUCAGGUGCAGU---UAUUG .(((((.(.(((..((((((..((((........))))..))))))))).).))))).(..((((..((.-.(((((....)))--))..))..))))..).........---..... ( -29.60) >consensus UCAUUCGGAAUCGAGAUCG________AUCGAUUUCGA____GAUCGAUGUGGAAUGCAUUUGUCGUUUU_GUACACGGAUGUG__UGUGGAUGGACAUUCAGGUGCAGUUGUUAUUG ....((((((((((..............))))))))))....(((.(((((.....))))).)))......((((..((((((............))))))..))))........... (-21.36 = -22.24 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:33 2006