Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,797,997 – 11,798,117 |
Length | 120 |
Max. P | 0.983692 |
Location | 11,797,997 – 11,798,117 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.06 |
Mean single sequence MFE | -27.98 |
Consensus MFE | -25.17 |
Energy contribution | -25.25 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.09 |
Mean z-score | -2.01 |
Structure conservation index | 0.90 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983692 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11797997 120 - 22224390 UAUAUUGUGUAUUUUAUUGUAUUUCCGUUCUUCUUCGUCAACAUAUUCGUGGCCUUGAUUAUUAUUACGUUUCAAGAGCAAGGCGAAGCUGAGUUACAAGAUGGCGAAAUUGACAAAAAU ....((((..((((..(..(.......(((..(((((((..(((....)))(((((((.............))))).))..)))))))..))).......)..)..))))..)))).... ( -24.26) >DroVir_CAF1 4384 120 - 1 UAUAUAGUAUAUUUUAUUGUAUUUCCAUUCUUCUUCGUCAACAUAUUCGUCGCCUUGAUAAUUAUUACAUUUCAAGAGCAAGGCGAAGCUGAAUUACAAGACGGUGAAAUUGACAAAAAU ......((..((((((((((......((((..(((((((.((......)).(((((((.............))))).))..)))))))..))))......))))))))))..))...... ( -27.22) >DroWil_CAF1 3260 120 - 1 UAUAUUGUAUAUUUUAUUGUAUUUCCAUUCUUCUUCGUCAACAUAUUCGUGGCCUUGAUAAUCAUAACAUUUCAAGAGCAAGGCGAAGCUGAAUUGCAAGAUGGUGAAAUUGACAAGAAU ....((((..(((((((..(.((.(.((((..(((((((..(((....)))(((((((.............))))).))..)))))))..)))).).)).)..)))))))..)))).... ( -28.82) >DroMoj_CAF1 2881 120 - 1 UAUAUAGUAUAUUUUAUUGUAUUUCCAUUCUUCUUCGUCAACAUAUUCGUCGCCUUGAUUAUCAUAACAUUUCAAGAGCAAGGCGAAGCUGAAUUGCAAGAUGGUGAAAUUGACAAAAAU ......((..(((((((..(.((.(.((((..(((((((.((......)).(((((((.............))))).))..)))))))..)))).).)).)..)))))))..))...... ( -25.62) >DroAna_CAF1 2100 120 - 1 UAUAUUGUGUAUUUUAUUGUGUUUCCAUUCUUCUUCGUCAACAUAUUCGUGGCCUUGAUUAUUAUUACGUUUCAAGAGCAAGGCGAAGCCGAGCUACAAGACGGUGAAAUUGACAAAAAU ....((((..((((((((((.((....(((..(((((((..(((....)))(((((((.............))))).))..)))))))..)))....)).))))))))))..)))).... ( -29.12) >DroPer_CAF1 4 120 - 1 UAUAUUGUCUAUUUUAUUGUAUUUCCAUUCUUCUUCGUCAACAUAUUCGUGGCCUUGAUUAUUAUCACAUUUCAAGAGCAAGGCGAAGCUGAGUUACAAGAUGGUGAAAUUGACAAGAAC ....(((((.(((((((..(......((((..(((((((..(((....)))(((((((.............))))).))..)))))))..))))......)..))))))).))))).... ( -32.82) >consensus UAUAUUGUAUAUUUUAUUGUAUUUCCAUUCUUCUUCGUCAACAUAUUCGUGGCCUUGAUUAUUAUUACAUUUCAAGAGCAAGGCGAAGCUGAAUUACAAGAUGGUGAAAUUGACAAAAAU ....((((..((((((((((......((((..(((((((.((......)).(((((((.............))))).))..)))))))..))))......))))))))))..)))).... (-25.17 = -25.25 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:32 2006