| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,788,016 – 11,788,106 |
| Length | 90 |
| Max. P | 0.627489 |
| Location | 11,788,016 – 11,788,106 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 76.32 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -11.72 |
| Energy contribution | -11.63 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11788016 90 + 22224390 ---AUUU----------CCG----G---------UU-UUGACUUACCUGCAUGCCGAUAAUGGCGUAUAUGAAAAAUAGCAUUGCUAUUAGCAAACAGACAUAGGGAAGUGCCUUAA ---((((----------(((----(---------(.-.......)))((((((((......)))))........((((((...)))))).)))...........))))))....... ( -20.60) >DroVir_CAF1 23155 96 + 1 CA-GUUCAGC--------GC----GA--------ACGGAAACUUACCUGCAUGCCAAUAAUGGCGUAAAUAAAAAAUAGCAUUGCAAUAAGCAAACAGACAUAUGGAAGUGCUUUAA ..-....(((--------((----..--------.((....)....(((.((((((....))))))...............((((.....)))).)))......)...))))).... ( -19.50) >DroGri_CAF1 20719 102 + 1 ---ACUGUUGUUUUGGGUGA----GA--------ACGGAAACUUACCUGCAUGCCAAUAAUGGCGUAUAUAAAAAAUAGCAUUGCAAUAAGCAAACAGACAUAUGGAAGUGCUUUAA ---..(((((((((((((((----(.--------.......)))))))..((((((....))))))......))))))))).......(((((..((......))....)))))... ( -25.70) >DroWil_CAF1 27287 100 + 1 ---AUAU----------AUG----UAUAUAUGGAUGGAGGACUUACCUGCAUGCCAAUAAUGGCGUAUAUAAAAAAUAGCAUUGCUAUAAGCAAACAGACAUAUGGAAGUGCUUUAA ---((((----------(((----(.....((((((.(((.....))).))).)))......)))))))).......((((((.(((((.(........).))))).)))))).... ( -24.20) >DroAna_CAF1 17634 94 + 1 CGGAUU-----------CGG----GA--------UCCGGGACUUACCUGCAUGCCGAUAAUAGCGUAUAUGAAAAACAGCAUAGCUAUAAGCAAACAGACAUAUGGAAGUGCUUUAA .....(-----------(((----.(--------(.((((.....)))).)).))))..(((((.....((.....)).....)))))(((((..((......))....)))))... ( -21.30) >DroPer_CAF1 19125 97 + 1 GGAACG-----------GUGGAACG---------UUUGAAACUUACCUGCAUGCCAAUAAUGGCGUAUAUAAAGAAUAGCAUGGCUAUAAGCAAACAGACAUAUGGAAGUGCUUUAA .(((((-----------......))---------))).............((((((....))))))...........(((((..(((((.(........).)))))..))))).... ( -20.20) >consensus ___AUU___________CGG____GA________UCGGAAACUUACCUGCAUGCCAAUAAUGGCGUAUAUAAAAAAUAGCAUUGCUAUAAGCAAACAGACAUAUGGAAGUGCUUUAA ........................................((((.(((((((((((....))))))...((.....)))))((((.....))))..........))))))....... (-11.72 = -11.63 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:26 2006