Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,784,488 – 11,784,593 |
Length | 105 |
Max. P | 0.907232 |
Location | 11,784,488 – 11,784,593 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 88.75 |
Mean single sequence MFE | -34.57 |
Consensus MFE | -26.50 |
Energy contribution | -26.67 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.06 |
Mean z-score | -4.90 |
Structure conservation index | 0.77 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11784488 105 + 22224390 CAUAUUGCUAUACAUAUAUCUCAGGGAUUGCAAGGAUUGCAUAGUACGAGAUACAUACUGUCGCAGUUAUGCAGCUUGUUUAAUUACCCUGAAAUAUAUGGCUUU ............(((((((.((((((.(((((..((((((((((((.(.....).)))))).)))))).)))))..((......)))))))).)))))))..... ( -30.10) >DroSec_CAF1 14359 101 + 1 CAUAUUGCUAU----AUAUCUCAGGGAUCGGAAGGAUUGCAUAGUACGAGAUACAUACUAUCGCAGCUAUGCAGCUUGUUCAAUUACCCUGAAAUAUAUGGCUUU ......(((((----((((.((((((....(((.(((((((((((....((((.....))))...))))))))).)).))).....)))))).)))))))))... ( -38.20) >DroSim_CAF1 14442 92 + 1 CAUAUUGCUAU----AUAUCUCAGGGAUCGCAAGGAUUGCAUAGUACGAGA---------UCGCAGCUAUGCAGCUUGUUCAAUUACCCUGAAAUAUAUGGCUUU ......(((((----((((.((((((...(((((..(((((((((.((...---------.))..)))))))))))))).......)))))).)))))))))... ( -35.40) >consensus CAUAUUGCUAU____AUAUCUCAGGGAUCGCAAGGAUUGCAUAGUACGAGAUACAUACU_UCGCAGCUAUGCAGCUUGUUCAAUUACCCUGAAAUAUAUGGCUUU ......(((((....((((.((((((...(((((..(((((((((....((((.....))))...)))))))))))))).......)))))).)))))))))... (-26.50 = -26.67 + 0.17)
Location | 11,784,488 – 11,784,593 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 88.75 |
Mean single sequence MFE | -34.70 |
Consensus MFE | -27.22 |
Energy contribution | -28.00 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -5.49 |
Structure conservation index | 0.78 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.869746 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11784488 105 - 22224390 AAAGCCAUAUAUUUCAGGGUAAUUAAACAAGCUGCAUAACUGCGACAGUAUGUAUCUCGUACUAUGCAAUCCUUGCAAUCCCUGAGAUAUAUGUAUAGCAAUAUG ...((((((((((((((((.......((.((.((((((.(((...))))))))).)).))....((((.....))))..))))))))))))))....))...... ( -31.30) >DroSec_CAF1 14359 101 - 1 AAAGCCAUAUAUUUCAGGGUAAUUGAACAAGCUGCAUAGCUGCGAUAGUAUGUAUCUCGUACUAUGCAAUCCUUCCGAUCCCUGAGAUAU----AUAGCAAUAUG ...((.(((((((((((((..((((....((((....))))((.((((((((.....))))))))))........)))))))))))))))----)).))...... ( -35.30) >DroSim_CAF1 14442 92 - 1 AAAGCCAUAUAUUUCAGGGUAAUUGAACAAGCUGCAUAGCUGCGA---------UCUCGUACUAUGCAAUCCUUGCGAUCCCUGAGAUAU----AUAGCAAUAUG ...((.(((((((((((((..((((..((((.(((((((.((((.---------...)))))))))))...)))))))))))))))))))----)).))...... ( -37.50) >consensus AAAGCCAUAUAUUUCAGGGUAAUUGAACAAGCUGCAUAGCUGCGA_AGUAUGUAUCUCGUACUAUGCAAUCCUUGCGAUCCCUGAGAUAU____AUAGCAAUAUG ...((.(((((((((((((..((((..((((.(((((((.(((((...........))))))))))))...)))))))))))))))))))....)).))...... (-27.22 = -28.00 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:25 2006