Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,784,278 – 11,784,372 |
Length | 94 |
Max. P | 0.835036 |
Location | 11,784,278 – 11,784,372 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.86 |
Mean single sequence MFE | -21.48 |
Consensus MFE | -13.63 |
Energy contribution | -16.63 |
Covariance contribution | 3.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.49 |
Structure conservation index | 0.63 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835036 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11784278 94 - 22224390 AUAACAUCGU--------------AUCAUACCCCCGCUGUCCCCCCCCCCCCCCAUCCGUAUGUAUAUACACUUGAACAACCUGGCGCUUUCGAGUGCCCAGGUAUCU ........((--------------(((((((...........................))))).))))...........((((((((((....)))).)))))).... ( -16.93) >DroSec_CAF1 14150 99 - 1 AUAACAUCGUUCAGUUCCCGAUAUACCAUACCCCCGCCGUCCC--------CCCAUCCGUAUGUAUAUACACUUGAACAUCCUGGCGCUUUCGAGUGC-CAGGUAUCU ........((((((......((((((.((((............--------.......))))))))))....))))))..(((((((((....)))))-))))..... ( -25.81) >DroSim_CAF1 14233 99 - 1 AUAACAUCGUUCAGUUCCCGAUAUACCAUACCCCCGCCGUCCC--------CCCAUCCGUAUGUAUAUACACUUGAUCAUCCUGGCGCUUUCGAGUGC-CAGGUAUCU ........(.((((......((((((.((((............--------.......))))))))))....)))).)..(((((((((....)))))-))))..... ( -21.71) >consensus AUAACAUCGUUCAGUUCCCGAUAUACCAUACCCCCGCCGUCCC________CCCAUCCGUAUGUAUAUACACUUGAACAUCCUGGCGCUUUCGAGUGC_CAGGUAUCU ........((((((......(((((.(((((...........................))))))))))....))))))..(((((((((....))))).))))..... (-13.63 = -16.63 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:24 2006