Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,783,252 – 11,783,395 |
Length | 143 |
Max. P | 0.997139 |
Location | 11,783,252 – 11,783,356 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.59 |
Mean single sequence MFE | -27.72 |
Consensus MFE | -14.32 |
Energy contribution | -14.48 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.22 |
Mean z-score | -1.92 |
Structure conservation index | 0.52 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11783252 104 - 22224390 GUAUUCACAUUUCACGAAU----AGCAAGUUGAA-AUGUGAGUGCUGGGUGAAUCAUAGUCCGUACACACUCGACU-------AUAGAUAUGAUCUU--UGUUUCGGAACAAGUUCCC (((((((((((((((....----.....).))))-)))))))))).((((.((((((((((.((....))..))))-------)).))).).)))).--......((((....)))). ( -28.90) >DroSec_CAF1 13175 101 - 1 GUAUUCACAUUUCACGAAU----AGCA-GUUGAA-AUGUGAGUGCUGGGUGAAUCAUAGUCUGUAC--ACUCGACU-------AUAGAUAUGAUCUU--UGUUGCGGAACAAGUUCCC (((((((((((((((....----....-).))))-)))))))))).(((...((((((.((((((.--.......)-------))))))))))).((--((((....))))))..))) ( -30.60) >DroSim_CAF1 13258 101 - 1 GUAUUCACAUUUCACGAAU----AGCA-GUUGAA-AUGUGAGUGCUGGGUGAAUCAUAGUCUGUAC--ACUCGACU-------AUAGAUAUGAUCUU--UGUUGCGGAACAAGUUCCC (((((((((((((((....----....-).))))-)))))))))).(((...((((((.((((((.--.......)-------))))))))))).((--((((....))))))..))) ( -30.60) >DroEre_CAF1 12871 97 - 1 GCAUUCACAUUUCGCGAAU----AGCAA--UGAU-AUGUGAGUGCCGGGUGAA----------CAC--ACUCGACUGUAGAUUAUAGACAUGAUCUU--UGUUUCGGAACAAGUUCUC ((((((((((.((((....----.))..--.)).-))))))))))((((((..----------..)--)))))((...(((((((....))))))).--.))...((((....)))). ( -28.60) >DroYak_CAF1 13134 101 - 1 GUAUUCACAUAUCACAAAUUGAUGGCAAAUUGAUAAUGUGAGUGCUGGGUGAAACAUAGUCCGUAC--ACUCGACU-------AUAGAUAUGAACUUACUGUUACGGGGC-------- ((((((((((((((....(((....)))..)))).))))))))))...((((.....(((.((((.--..((....-------...)))))).))).....)))).....-------- ( -19.90) >consensus GUAUUCACAUUUCACGAAU____AGCAAGUUGAA_AUGUGAGUGCUGGGUGAAUCAUAGUCCGUAC__ACUCGACU_______AUAGAUAUGAUCUU__UGUUGCGGAACAAGUUCCC ((((((((((((((................)))).))))))))))(((((..................)))))................................((((....)))). (-14.32 = -14.48 + 0.16)
Location | 11,783,285 – 11,783,395 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 83.90 |
Mean single sequence MFE | -30.70 |
Consensus MFE | -24.48 |
Energy contribution | -24.16 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.08 |
Mean z-score | -3.24 |
Structure conservation index | 0.80 |
SVM decision value | 2.80 |
SVM RNA-class probability | 0.997139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11783285 110 - 22224390 UAACCCGAUUUAAACGAUUAUCUACACUGUU-AAUGCCCGGUAUUCACAUUUCACGAAU----AGCAAGUUGAA-AUGUGAGUGCUGGGUGAAUCAUAGUCCGUACACACUCGACU ..............(((.....((((((((.-...((((((((((((((((((((....----.....).))))-))))))))))))))).....)))))..))).....)))... ( -33.60) >DroSec_CAF1 13208 107 - 1 UUACCCAAUUUAAACGAUUAUCUACACUGUU-AAUGCCUGGUAUUCACAUUUCACGAAU----AGCA-GUUGAA-AUGUGAGUGCUGGGUGAAUCAUAGUCUGUAC--ACUCGACU ..............(((........(((((.-...(((..(((((((((((((((....----....-).))))-))))))))))..))).....)))))......--..)))... ( -31.09) >DroSim_CAF1 13291 107 - 1 UUACCCAAUUUAAACGAUUAUCUACACUGUU-AAUGCCCGGUAUUCACAUUUCACGAAU----AGCA-GUUGAA-AUGUGAGUGCUGGGUGAAUCAUAGUCUGUAC--ACUCGACU ..............(((........(((((.-...((((((((((((((((((((....----....-).))))-))))))))))))))).....)))))......--..)))... ( -33.69) >DroYak_CAF1 13161 102 - 1 UAACACAAUUU------------ACACUGUUUUCUGCACGGUAUUCACAUAUCACAAAUUGAUGGCAAAUUGAUAAUGUGAGUGCUGGGUGAAACAUAGUCCGUAC--ACUCGACU ..........(------------(((((((((((.((.((((((((((((((((....(((....)))..)))).)))))))))))).)))))).)))))..))).--........ ( -24.40) >consensus UAACCCAAUUUAAACGAUUAUCUACACUGUU_AAUGCCCGGUAUUCACAUUUCACGAAU____AGCA_GUUGAA_AUGUGAGUGCUGGGUGAAUCAUAGUCCGUAC__ACUCGACU .........................(((((.....(((((((((((((((((((................)))).))))))))))))))).....)))))................ (-24.48 = -24.16 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:23 2006