Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,782,659 – 11,782,776 |
Length | 117 |
Max. P | 0.514975 |
Location | 11,782,659 – 11,782,776 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.38 |
Mean single sequence MFE | -37.90 |
Consensus MFE | -27.13 |
Energy contribution | -27.00 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.41 |
Mean z-score | -1.91 |
Structure conservation index | 0.72 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514975 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11782659 117 - 22224390 ---CAGCUGAGGAGAUGGACCAGGCGGACAUGGAACUGCGGGAGACCAUCACGAACAUCUGGCCAUUGCAGGCGAAGAAGAUGCUAAACCUGCUGGUGCCGCCCAGCGAUCAGCUCAACA ---.((((((((.(((((.((((((((........))))((....))...........)))))))))(((..(......).)))....))((((((......)))))).))))))..... ( -41.70) >DroVir_CAF1 15367 118 - 1 C--UAGCGGAGGAAAUGGAUCAGGCGGACAUAGAGCUCCGGGAAACCAUCACGAACAUUUGGCCAUUGCAGGCCAAGAAAAUGUUGAAUCUUUUGGUACCUCCCAUUGAUCAAUUGAACA .--..(.(((((.((.((((..((((((........)))((....))..........(((((((......))))))).....)))..)))).))....))))))................ ( -30.50) >DroGri_CAF1 13794 118 - 1 G--UAGCUGAGGAAAUGGACCAGGCGGACAUGGAACUCAGGGAAACCAUCACAAACAUCUGGCCAUUGCAGGCCAAGAAAAUGUUAAACUUACUGGUUCCACCCAUUGAUCAGCUAAACA .--(((((((...(((((.((....))...((((((.((((....))......(((((((((((......)))).)))...))))........)))))))).)))))..))))))).... ( -41.40) >DroWil_CAF1 20508 118 - 1 A--CAGCUGAGGAAAUGGAUCAGGCGGAUAUGGAGCUCAGGGAAACUAUUACAAACAUUUGGCCACUGCAGGCAAAGAAAAUGCUGAAUCUACUGGUGCCACCGAUCGAUCAGUUGAAUA .--(((((((.....(.((((.((.((.((((((..(((((....).........(((((.(((......))).....))))))))).)))).))...)).)))))).)))))))).... ( -32.10) >DroMoj_CAF1 16321 120 - 1 CUGUAGCUGAGGAAAUGGACCAGGCGGACCUAGAGCUCAGGGAAACCAUCACGAACAUCUGGCCAUUGCAGGCAAAGAAAAUGCUGAAUCUGCUGGUUCCGCCCAUCGAUCAGUUGAACA ...(((((((((.......)).((((((((((((..(((((....))..........(((.(((......)))..)))......))).))))..)).))))))......))))))).... ( -35.90) >DroAna_CAF1 11891 118 - 1 G--CAGCUGAGGAGAUGGACCAGGCGGACUUGGAACUCAGGGAAACCAUCACCAACAUUUGGCCACUGCAGGCGAAGAAGAUGCUGAACCUGCUGGUGCCGCCCAGUGAUCAGCUGAACA .--(((((((((.((((..(((((....)))))..)...((....))))).))..((((.((((((((((((...((......))...))))).))))..))).)))).))))))).... ( -45.80) >consensus C__CAGCUGAGGAAAUGGACCAGGCGGACAUGGAACUCAGGGAAACCAUCACGAACAUCUGGCCAUUGCAGGCAAAGAAAAUGCUGAACCUGCUGGUGCCGCCCAUCGAUCAGCUGAACA ...(((((((...((((((((((..((............((....))........(((((.(((......))).....))))).....))..))))).....)))))..))))))).... (-27.13 = -27.00 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:21 2006