Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,317,354 – 1,317,451 |
Length | 97 |
Max. P | 0.841215 |
Location | 1,317,354 – 1,317,451 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 92.01 |
Mean single sequence MFE | -25.76 |
Consensus MFE | -19.64 |
Energy contribution | -19.51 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.10 |
Mean z-score | -2.55 |
Structure conservation index | 0.76 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.841215 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1317354 97 + 22224390 UCCGCAACAGUCGUGCUCGCUGCAUUUUGCCCAAGUUAAUUAAU-CUUCCCCAAAAUUACGAGAUUUUACUUUCGCAGUUUUGCGGCGAGCAACAAAA .............(((((((((((..((((..((((.....(((-(((............))))))..))))..))))...)))))))))))...... ( -29.60) >DroSec_CAF1 53512 98 + 1 UCUGCAACAGUCGUGCUCGCUGCAUUUCGUCCAAGUUAAUUUAUACUUCCCCAAAAUUACGAGAUUUUACUUUCACAGUUUCGCGGCGAGCAACAAAA .............((((((((((.........((((........))))............((((((..........))))))))))))))))...... ( -22.80) >DroSim_CAF1 41482 98 + 1 UCUGCAACAGUCGUGCUCGCUGCAUUUCGCCCAAGUUAAUUUAUACUUCCCCAAAAUUACGAGAUUUUACUUUCACAGUUUCGCGGCGAGCAACAAAA .............((((((((((.........((((........))))............((((((..........))))))))))))))))...... ( -22.80) >DroEre_CAF1 51690 98 + 1 UCUGCAGCAGUCGUGCUCGCUGCAUUUCGGCCAAGUUAAUUUAUUUUUCCGCAAAACUACGAGUUUUUACUUUGGCAGUUUCGCGGCGAGCAGCAAAA ..(((.((....))(((((((((......((((((.(((...((((..............))))..))).))))))......))))))))).)))... ( -27.84) >consensus UCUGCAACAGUCGUGCUCGCUGCAUUUCGCCCAAGUUAAUUUAUACUUCCCCAAAAUUACGAGAUUUUACUUUCACAGUUUCGCGGCGAGCAACAAAA .........((..((((((((((((((((..............................))))))...(((.....)))...)))))))))))).... (-19.64 = -19.51 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:45 2006