Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,777,872 – 11,777,991 |
Length | 119 |
Max. P | 0.854358 |
Location | 11,777,872 – 11,777,991 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.04 |
Mean single sequence MFE | -31.89 |
Consensus MFE | -26.72 |
Energy contribution | -27.22 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.10 |
Mean z-score | -1.77 |
Structure conservation index | 0.84 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11777872 119 + 22224390 UUCGGCUCGAAACUUAUGGAGCCCUGACGCGAUCCUCCUUUGUCAAGGGCGGCCAUAUCGAGGAGGCAGUUAAAGAAAGAUUGUUUCUACGGUUUUUUUUUUUUUUUUUGGAUUUUGCG .....(((((....(((((.(((((((((...........)))).)))))..))))))))))...((((..(((((((((((((....))))))))))))).............)))). ( -33.56) >DroVir_CAF1 9186 91 + 1 UUCGGCUCAAAACUUAUGGAGCCCUGUCGCGAUCCUCCUUUGUCAAGGGCUGCCAUAUCGAGCAGGCAGUUAAAGAAUGAUUGUUUCUAUU---------------------------- ....((((......(((((((((((...((((.......))))..)))))).)))))..))))(((((((((.....))))))))).....---------------------------- ( -28.30) >DroGri_CAF1 7918 93 + 1 UUUGGCUCGAAACUUAUGGAGCCCUGUCGCGAUCCUCCUUUGUCAAGGGCGGCCAUAUCGAGCAGGCAAUUAAAGAAUGAUUGUUUCUAUU--UU------------------------ ....((((((....(((((.(((((...((((.......))))..)))))..)))))))))))(((((((((.....))))))))).....--..------------------------ ( -31.70) >DroEre_CAF1 7648 108 + 1 UUCGGCUCGAAACUUAUGGAGCCCUGUCGCGAUCCUCCUUUGUCAAGGGCGGCCAUAUCGAGGAGGCAGUUAAAGAAUGAUUGUUUCUACGGAUUU-----------UGCGAUUUUGAG .....(((((((..(((((.(((((...((((.......))))..)))))..)))))(((.(((((((((((.....))))))))))).)))....-----------.....))))))) ( -35.10) >DroWil_CAF1 13782 102 + 1 UUCGGCUCGAAACAUAUGGAGCCCUGUCGCGAUCCUCCUUUGUCAAGGGCGGCCAUAUCGAGGAGGCAAUUAAAGAACGAUUGUUUCUAUU--UUU---------GGUUUGGU------ .....(((((....(((((.(((((...((((.......))))..)))))..))))))))))(((((((((.......)))))))))....--...---------........------ ( -30.50) >DroAna_CAF1 7640 100 + 1 UUCGGCUCGAAACUUAUGGAACCCUGACGCGAUCCUCCUUUGUCAAGGGCGGCCAUGUCGAGGAGGCAGUUAAAAAAUGACUGUUUCUACGGAUUG-----------CACG-------- ((((.(((((....(((((..((((((((...........)))).))))...))))))))))((((((((((.....))))))))))..))))...-----------....-------- ( -32.20) >consensus UUCGGCUCGAAACUUAUGGAGCCCUGUCGCGAUCCUCCUUUGUCAAGGGCGGCCAUAUCGAGGAGGCAGUUAAAGAAUGAUUGUUUCUACG__UUU___________U__G________ .....(((((....(((((.(((((...((((.......))))..)))))..))))))))))((((((((((.....))))))))))................................ (-26.72 = -27.22 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:19 2006