Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,763,031 – 11,763,130 |
Length | 99 |
Max. P | 0.565726 |
Location | 11,763,031 – 11,763,130 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 75.84 |
Mean single sequence MFE | -38.28 |
Consensus MFE | -20.33 |
Energy contribution | -20.75 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.45 |
Mean z-score | -1.64 |
Structure conservation index | 0.53 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565726 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11763031 99 + 22224390 AGAUGAGCACAUUCCGGCUAUCCCGCUGACUGGCCUCGAUAAACGGCACCGGCGCCAGCGUGAUGGUGCAGUACGUCUCACUGGCGCCCGGA------UAGCCCA ...............((((((((.........(((.........)))...((((((((.(.((((........)))).).)))))))).)))------))))).. ( -41.70) >DroVir_CAF1 28839 99 + 1 AGAUUAACACGUGUCGGUUAUCUUUCUGAUGUGCCUCAAUGAAAGGCACUGGCGCCAGCGUUAUAGUACAGUAUAUGCUGCUGGUGCCCGGC------CAGGCCA ............(((((........)))))((((((.......)))))).((((((((((.((((........)))).)))))))))).(((------...))). ( -36.10) >DroPse_CAF1 25584 105 + 1 AGAUGAGCACAUGCCGGUGGUCCUUCUGAUGCGCCUCGAUAAAGGGCACCGGCGCCAGGGUAAUGGUGCAGUAGGUGUCGCCAUUGCCCGGCGAUGUCCAGGGCA .(.((..(((..(((((((.(((((.(((......)))...))))))))))))(((.(((((((((((((.....)).))))))))))))))).))..))...). ( -47.20) >DroGri_CAF1 18697 99 + 1 AGAUCAGCACAUGACGAUUAUCCUUCUGAUGCGCCUCAAUGAACGGCACCGGCGCCAGCGUAAUUGUACAAUACACUUCACUAGUGCCCGGA------AAAGCCA .((...(((((.((.(......).)))).)))...)).......(((.(((((((.((.(.((.((((...)))).))).)).))).)))).------...))). ( -20.90) >DroEre_CAF1 45558 99 + 1 AGAUGAGCACAUUCCGGCUAUCCCGCUGACUGGCCUCGAUGAAGGGCACCGGCGCCAGUGUGAUGGUGCAGUACGUCUCACUGGCACCCGGA------CAGCCCA .........((((..(((((((.....)).)))))..))))..((((.((((.(((((((.((((........)))).)))))))..)))).------..)))). ( -42.20) >DroMoj_CAF1 23008 99 + 1 AGAUGAGCACGUGUCGAUGGUCCUUCUGAUGCACCUCAAUGAACGGCACGGGCGCCAGCGUGAUCGUGCAGUAGAUGCUGCUGGUGCCCGGC------CAGGCCA ...((((...(((((((.......)).)))))..))))......(((.((((((((((((..(((........)))..))))))))))))))------)...... ( -41.60) >consensus AGAUGAGCACAUGCCGGUUAUCCUUCUGAUGCGCCUCAAUGAACGGCACCGGCGCCAGCGUGAUGGUGCAGUACAUGUCACUGGUGCCCGGA______CAGGCCA ............((((................(((.........)))...((((((((.(.((((........)))).).))))))))))))............. (-20.33 = -20.75 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:07 2006