Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,758,153 – 11,758,257 |
Length | 104 |
Max. P | 0.650930 |
Location | 11,758,153 – 11,758,257 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 81.21 |
Mean single sequence MFE | -41.87 |
Consensus MFE | -32.94 |
Energy contribution | -33.22 |
Covariance contribution | 0.29 |
Combinations/Pair | 1.43 |
Mean z-score | -1.35 |
Structure conservation index | 0.79 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650930 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11758153 104 + 22224390 CCAGCGAUCGGGGGGCAGGUAACGAUUCCGCCGAUUCUCGCUAUAUGCGGCGGAAUACUCGGAUCGUCCGAUAGUCCGGACUCCUCGCUGGGAUCCUCACUGGA (((((((((.(((....(....).(((((((((.....)((.....)))))))))).))).))))(((((......))))).....)))))..(((.....))) ( -43.30) >DroGri_CAF1 13803 98 + 1 CCGGCGAUUGGCGAGAAUGUGAGAAUGCCUCCAAUCCUGGCUAUAUGUGGCGGUAUGCGUGGAUCUGCUU------CGGUCUCCAGUCCAACAUUACUGCCGGA ((((.((((((.(.(.((......)).)).)))))))))).......((((((((....((((.((((..------..)....)))))))....)))))))).. ( -31.70) >DroSec_CAF1 11573 104 + 1 CCAGCGAUCGGGGGGCAGGUAACGAUUCCGCCGAUCCUCGCUAUAUGCGGCGGAAUACUCGGAUCGUCCGAUAGUCCGGACUCCUCGCUGGGAUCCUCACUGGA (((((((((.((((((.((........)))))..(((((((.....)))).)))...))).))))(((((......))))).....)))))..(((.....))) ( -44.00) >DroSim_CAF1 6481 104 + 1 CCAGCGAUCGGGGGGCAGGUAACGAUUCCGCCGAUCCUCGCUAUAUGCGGCGGAAUACUCGGAUCGUCCGAUAGUCCGGACUCCUCGCUGGGAUCCUCACUGGA (((((((((.((((((.((........)))))..(((((((.....)))).)))...))).))))(((((......))))).....)))))..(((.....))) ( -44.00) >DroEre_CAF1 40829 95 + 1 CCGGCGAUCGGGGGGCAGGUGACGAUUCCGCCGAUCCUCGCUAUAUGCGGCGGAAUACUCGGAUC---UG------UGGACUCCUCGCUGGGAUCCUCGCUGGA (((((((((.(((....(....).(((((((((.....)((.....)))))))))).))).))))---.(------.(((..((.....))..))).)))))). ( -43.40) >DroYak_CAF1 12724 104 + 1 CCGGCGAUCGGAGGACAGGUGACGAUGCCGCCGAUCCUCGCUAUGUGCGGCGGAAUGCUCGGAUCGUCUGAAAGGCCGGACUCCUCGCUGGGAUCCUCACUGGA (((((((..((((..(.(((((((((.(((.((.(((((((.....)))).))).))..)))))))))......))))..)))))))))))..(((.....))) ( -44.80) >consensus CCAGCGAUCGGGGGGCAGGUAACGAUUCCGCCGAUCCUCGCUAUAUGCGGCGGAAUACUCGGAUCGUCCGAUAGUCCGGACUCCUCGCUGGGAUCCUCACUGGA (((((((((.(((....(....).(((((((((..............))))))))).))).))))(((((......))))).....)))))..(((.....))) (-32.94 = -33.22 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:02 2006