Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,748,837 – 11,748,935 |
Length | 98 |
Max. P | 0.684771 |
Location | 11,748,837 – 11,748,935 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 83.16 |
Mean single sequence MFE | -20.87 |
Consensus MFE | -18.42 |
Energy contribution | -18.20 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.27 |
Structure conservation index | 0.88 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11748837 98 + 22224390 CCAUCACACCAGCACACACACAAAACCAACACUGAGAGACCAGAAGGUAUCUAUA-GAUAGGUUCGCAUUGUCGCUCAGUUGGAAAAAACUGGUAUUUU .......(((((.............(((..((((((.(((..(((..((((....-))))..))).....))).)))))))))......)))))..... ( -21.41) >DroSec_CAF1 3710 94 + 1 CCAGCACAC----ACAUACACC-AACCAACACUGGGAGACCAGAAGGUAUCUGUAGGAUAGGUUCGCAUUGUCGCUCAGUUGGAAAAAACUGGUAUUUU ..(((....----...((((..-.(((....((((....))))..)))...)))).(((((.......))))))))(((((......)))))....... ( -22.20) >DroEre_CAF1 6184 81 + 1 CACA--------------CAC---ACCAACACUGAGAGACCAGAAGGUAUCUAUA-GAUAGGUUCGCAUUGUCGCUCAGUUGGAAAAAACUGGUAUUUU ....--------------...---.(((..((((((.(((..(((..((((....-))))..))).....))).)))))))))................ ( -19.00) >consensus CCAACACAC____ACA_ACAC__AACCAACACUGAGAGACCAGAAGGUAUCUAUA_GAUAGGUUCGCAUUGUCGCUCAGUUGGAAAAAACUGGUAUUUU .........................(((..((((((.(((..(((..((((.....))))..))).....))).)))))))))................ (-18.42 = -18.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:01 2006