Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,734,670 – 11,734,781 |
Length | 111 |
Max. P | 0.919579 |
Location | 11,734,670 – 11,734,781 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 88.50 |
Mean single sequence MFE | -48.12 |
Consensus MFE | -40.45 |
Energy contribution | -41.95 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.06 |
Mean z-score | -2.03 |
Structure conservation index | 0.84 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919579 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11734670 111 - 22224390 GCCAGGCGACAUGCCAUUGGCCACCGGCCAU-------UGGCCAUUGGUCACGAGUGCGCUCCCGAGACGGAGUUCGCCCACGGAUGAGCCAAUCUGCCAGCAAGGCGCCACACAAGA (((..(((((..((((.(((((...))))).-------)))).....)))..(.(((.(((((......))))).))).).(((((......)))))...))..)))........... ( -40.60) >DroSec_CAF1 3105 111 - 1 GCCAGGCGUCUUGCCAGUGGCCACCGGCCAU-------UGGCAAUUGGUCACGAGUGCGCUCCCAAGACGGAGUUCGCCCACGGAUGAGACAAUCUGCCAGCGAGGCGCCACACAAGA ....((((((((((((((((((...))))))-------))))..((((....(.(((.(((((......))))).))).).(((((......))))))))).))))))))........ ( -49.90) >DroEre_CAF1 3184 118 - 1 GCCAGGCGACUUGCCACUGGCCCCCGGCCAUUGGGCAUUGGCCAUUGGUCAUGAGUGCGCUCCUAAGACGGAGUUCGCCAACGGAUGAGCCAGCCUGCCAGCAAGGCGCCACACAAGA ....((((.(((((((.(((((...))))).))(((((((((((((.((..((.(((.(((((......))))).))))))).)))).)))))..)))).))))).))))........ ( -54.10) >DroYak_CAF1 3747 111 - 1 GCCAGGCGACUUGCCACUGGCCACCGGCCAU-------UGGCCAUUGGUCAGGAGUGCGCUCCUUAGGCGGAGUUCGCCCAUGGAUGAGUCAACCUGCCAGCAAGGCGCCACAAAAGA ....(((((((((((((((((((..((((..-------.))))..)))))))(.(((.(((((......))))).))).).))).)))))).....(((.....))))))........ ( -47.90) >consensus GCCAGGCGACUUGCCACUGGCCACCGGCCAU_______UGGCCAUUGGUCACGAGUGCGCUCCCAAGACGGAGUUCGCCCACGGAUGAGCCAACCUGCCAGCAAGGCGCCACACAAGA ....(((((((((((.(((((((..(((((........)))))..)))))))..(((.(((((......))))).)))....)).)))))).....(((.....))))))........ (-40.45 = -41.95 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:00 2006