Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,727,996 – 11,728,086 |
Length | 90 |
Max. P | 0.535542 |
Location | 11,727,996 – 11,728,086 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -22.56 |
Energy contribution | -22.62 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.51 |
Structure conservation index | 0.84 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11727996 90 - 22224390 GGAACUAGCAACCGGAAGCCGGAAACGGGCCCAAAAACAAACGGUGCUUAUCUUGUUGAGCGAUCGUCGCACUGCUCCGUUCUCAUUAAU (((((.((((...((...(((....)))..))........((((((((((......))))).))))).....))))..)))))....... ( -25.30) >DroSec_CAF1 9462 90 - 1 GGAACCAGCAACCGGAAGCCGGAAACGGGACCAAAAACAAACGGUGCUUAUCUUGUUGAGCGAUCGUCGCACUGCUCCGUUCUCAUUAAU (((((.((((...((...(((....)))..))........((((((((((......))))).))))).....))))..)))))....... ( -25.00) >DroEre_CAF1 7021 90 - 1 GGAACCGGGAAGCGGAAACCGGAAACGGGACCAAAAACAAACGGUGCUUAUCUUGUUGAGCGAUCGUCGCACUGCUCCGUUCUCAAUAAU (((((..(((.((((...(((....)))............((((((((((......))))).)))))....))))))))))))....... ( -28.80) >DroYak_CAF1 9835 90 - 1 GGAACCGGCAACGGAAAACCGGAAACGGGACCAAAAACAAACGGUGCUUAUCUUGUUGAGCGAUUGUCGCACUGCUCCGUUCUCAAUAGU ((..(((....)))....(((....)))..)).......(((((.((...((.....))(((.....)))...)).)))))......... ( -28.50) >consensus GGAACCAGCAACCGGAAACCGGAAACGGGACCAAAAACAAACGGUGCUUAUCUUGUUGAGCGAUCGUCGCACUGCUCCGUUCUCAAUAAU (((((.((((...((...(((....)))..))........((((((((((......))))).))))).....))))..)))))....... (-22.56 = -22.62 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:59 2006