Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,715,227 – 11,715,318 |
Length | 91 |
Max. P | 0.511346 |
Location | 11,715,227 – 11,715,318 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 77.71 |
Mean single sequence MFE | -23.11 |
Consensus MFE | -17.33 |
Energy contribution | -17.22 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.19 |
Mean z-score | -0.84 |
Structure conservation index | 0.75 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11715227 91 - 22224390 CGAGAAGCUCGUCCAGGAUGGCGUAUAUACCUGCGCCUACACCUUGCAUGAUGUGGGUUCA-AGAUCCGU-------UUUAAUUGAAAUUUUCAACUCA .(((((((((((.((((..((((((......)))))).....)))).))))...(((((..-.)))))))-------))...((((.....))))))). ( -21.40) >DroGri_CAF1 8157 88 - 1 CGAGAAGCUCGUCGAGGAUGGCGUCUACCUGUGCGCCUAUGCCCUGCACGAAGUGAGCUAA-CAAGCUAA--------UC-AUUUAACUAAUCGUCUG- (((..((.((((((.((..(((((........)))))....)).)).)))).(..((((..-..))))..--------.)-......))..)))....- ( -19.90) >DroSec_CAF1 9228 91 - 1 CGAGAAGCUCGUCCAGGAUGGCGUGUACACCUGCGCCUACACCUUGCAUGAUGUGGGUUCU-AGAUCCAU-------UUCAAUUCAAAUUUUCCACUCA .(((......((..(((..(((((........)))))....))).)).(((.(((((((..-.)))))))-------.)))..............))). ( -22.30) >DroSim_CAF1 7764 91 - 1 CGAGAAGCUCGUCCAGGAUGGCGUGUACACCUGCGCCUACACCUUGCAUGAUGUGGGUUCU-AGAUCCAU-------UUCAAUUCAAAUUUUCCACUCA .(((......((..(((..(((((........)))))....))).)).(((.(((((((..-.)))))))-------.)))..............))). ( -22.30) >DroEre_CAF1 7217 94 - 1 CGAGAAGCUCGUCCAGGAUGGCGUCUACACCUGCGCCUACACCUUGCACGAUGUGGGUUCC-CGCUCCAUUUUCCCU----ACUCGAAUUUCCCACUCA ((((.((.((((.((((..(((((........))))).....)))).)))).((((....)-)))..........))----.))))............. ( -24.70) >DroYak_CAF1 7545 99 - 1 CGAGAAGCUCGUCCAGGAUGGCGUAUACACCUGCGCCUACACCUUGCACGAUGUGGGUUUCAAACUCCAAACGCCCUUUCAGUUUGAAUUUCUCACUCA .(((..((((((.((((..((((((......)))))).....)))).)))).))(((.((((((((..............))))))))...))).))). ( -28.04) >consensus CGAGAAGCUCGUCCAGGAUGGCGUAUACACCUGCGCCUACACCUUGCACGAUGUGGGUUCA_AGAUCCAU_______UUCAAUUCAAAUUUUCCACUCA .(((..((((((.((((..((((((......)))))).....)))).)))).)).((.........))...........................))). (-17.33 = -17.22 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:55 2006