Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,711,121 – 11,711,218 |
Length | 97 |
Max. P | 0.565542 |
Location | 11,711,121 – 11,711,218 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 93.64 |
Mean single sequence MFE | -20.62 |
Consensus MFE | -19.45 |
Energy contribution | -19.45 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.94 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11711121 97 - 22224390 UGAAAAUAUCAUAUAUAUAUUUUUUGAUCUACUAUGAACAUUUGCCCGCAGUGUGUGCCACUUACCUCGCCCCAAUCUGCACACGCUGGGCUGCCUG .((((((((.......))))))))((.((......)).))...((((..(((((((((....................)))))))))))))...... ( -21.15) >DroSec_CAF1 3266 89 - 1 UGAAAAUAUCAUAUAUAUAUU--UUGAUCUACUA------UUUGCCCGCAGUGUGUGCCACUUACCUCGCCACAAUCUGCACACGCUGGGCUGCCUG ..(((((((.......)))))--)).........------...((((..(((((((((....................)))))))))))))...... ( -20.35) >DroSim_CAF1 3334 89 - 1 UGAAAAUAUCAUAUAUAUAUU--UUGAUCUACUA------UUUGCCCGCAGUGUGUGCCACUUACCUCGCCCCAAUCUGCACACGCUGGGCUGCCUG ..(((((((.......)))))--)).........------...((((..(((((((((....................)))))))))))))...... ( -20.35) >consensus UGAAAAUAUCAUAUAUAUAUU__UUGAUCUACUA______UUUGCCCGCAGUGUGUGCCACUUACCUCGCCCCAAUCUGCACACGCUGGGCUGCCUG ...........................................((((..(((((((((....................)))))))))))))...... (-19.45 = -19.45 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:53 2006