Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,709,513 – 11,709,614 |
Length | 101 |
Max. P | 0.697537 |
Location | 11,709,513 – 11,709,614 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 89.31 |
Mean single sequence MFE | -32.98 |
Consensus MFE | -25.92 |
Energy contribution | -26.36 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.14 |
Mean z-score | -1.61 |
Structure conservation index | 0.79 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11709513 101 - 22224390 CCCAGAUGCCCGACUAUCUGGCCGAUUGCCUGGGCCAGAUAGCAAUCAAUAAUAAUCCGGCAUCGAGUAACUCUGACUCGGCGCAUUCGGUGUGAUGAUAG .((.((((((.((((((((((((.(.....).)))))))))).............)).))))))((((.......))))))(((((...)))))....... ( -34.61) >DroSec_CAF1 1665 98 - 1 CCCAGAUGCCCGACUAUCUGGCCGAUUGCCUGGGCCAGAUAGCAACCAAU---AAUCCGGCAUCGAGUAACUCUGACUCGGCGCAUUCGAUGUGAUGAUAG .((.((((((.((((((((((((.(.....).))))))))))........---..)).))))))((((.......))))))(((((...)))))....... ( -34.60) >DroSim_CAF1 1733 98 - 1 CCCAGAUGCCCGACUAUCUGGCCGAUUGCCUGGGCCAGAUAGCAACCAAU---AAUCCGGCAUCGAGUAACUCUGACUCGGCGCAUUCGAUGUGAUGAUAG .((.((((((.((((((((((((.(.....).))))))))))........---..)).))))))((((.......))))))(((((...)))))....... ( -34.60) >DroEre_CAF1 1858 98 - 1 CCCAGGUGCCCGAUUAUCUGGCCGAUUGCCUGGGCCAGAUAGUACCCAAU---AAUCCGGAAUCGAUUGACUGUGACUCGGCGCAUUCGGCUUGAUGAUAG ............((((((.((((((.((((((((((((.((((..((...---.....)).....)))).))).).))))).))).)))))).)))))).. ( -32.00) >DroYak_CAF1 1737 98 - 1 CCCACAUGCCCGAUUACCUGGCCGAUUGCCUCGGCCAGUUGGCACCCCAU---AAUCCGGAUUCGAGUAACCCUGACUCGGCGCAUUCAGUUUGAUGAUAG .....(((((((((((.((((((((.....)))))))).(((....))))---))).)))..((((((.......)))))).))))(((......)))... ( -29.10) >consensus CCCAGAUGCCCGACUAUCUGGCCGAUUGCCUGGGCCAGAUAGCAACCAAU___AAUCCGGCAUCGAGUAACUCUGACUCGGCGCAUUCGGUGUGAUGAUAG .((..((((((..((((((((((.........))))))))))......................((((.......)))))).))))..))........... (-25.92 = -26.36 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:52 2006