| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,707,366 – 11,707,469 |
| Length | 103 |
| Max. P | 0.997883 |
| Location | 11,707,366 – 11,707,469 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 93.64 |
| Mean single sequence MFE | -31.96 |
| Consensus MFE | -29.06 |
| Energy contribution | -28.94 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.91 |
| SVM decision value | 2.95 |
| SVM RNA-class probability | 0.997883 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11707366 103 - 22224390 AUUCCAGCAAAGCCCUGUUCCCU--GCUCACCAUUGCAAUCCGUUCUGGUGAGUGAAAGUGUUGCUAUCGCGAUCACGGUCGUCAGCCAACUGACUUUGCUGAAU ....((((((((((.........--((((((((..((.....))..))))))))....(((((((....)))).)))))).(((((....))))))))))))... ( -37.10) >DroSec_CAF1 4182 103 - 1 AUUCCAACAAAGCCCCGUUCCCU--GCUCACCAUUGCAAUCCGUUCUGGUGGGUGAAAGUGUUGCUAUUGCGAUCACGGUCGUCAGCCAACUGACUUUGCUGAAU ....((.(((((((.........--((((((((..((.....))..))))))))....(((((((....)))).)))))).(((((....))))))))).))... ( -30.20) >DroSim_CAF1 4583 103 - 1 AUUCCAACAAAGCCCCGCUCCCU--GCUCACCAUUGCAAUCCGUUCUGGUGGGUGAAAGUGUUGCUAUCGCGAUCACGGUCGUCAGCCAACUGACUUUGCUGAAU ....((.(((((((.........--((((((((..((.....))..))))))))....(((((((....)))).)))))).(((((....))))))))).))... ( -29.60) >DroEre_CAF1 4196 105 - 1 AUUCUACAAAAGCACCAUUCCCUAUGCUCACCAUUGCAAUCCGUUCUGGUGGGUGAAAGUGUUGUUAUCGCGAUCACGGUCGUCAGCCAACUGACUUUGCGGAAU ((((..((((.(.(((.........((((((((..((.....))..))))))))....(((((((....)))).)))))))(((((....)))))))))..)))) ( -31.70) >DroYak_CAF1 4244 103 - 1 AUUCCACGAAAGCACCAAUCCCU--GCUCACCAUUGCAAUCCGUUCUGGUGGGUGAAAGUGUUGCUAUCGCGAUCACGGUCGUCAGCCAACUGACUUUGCUGAAU ..........((((((.......--((((((((..((.....))..))))))))....(((((((....)))).)))))).(((((....)))))...))).... ( -31.20) >consensus AUUCCAACAAAGCCCCGUUCCCU__GCUCACCAUUGCAAUCCGUUCUGGUGGGUGAAAGUGUUGCUAUCGCGAUCACGGUCGUCAGCCAACUGACUUUGCUGAAU ..........(((............((((((((..((.....))..))))))))((..(((((((....)))).)))..))(((((....)))))...))).... (-29.06 = -28.94 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:51 2006