Locus 443

Sequence ID X_DroMel_CAF1
Location 1,306,129 – 1,306,223
Length 94
Max. P 0.638274
window683

overview

Window 3

Location 1,306,129 – 1,306,223
Length 94
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 76.70
Mean single sequence MFE -26.42
Consensus MFE -13.42
Energy contribution -13.70
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.84
Structure conservation index 0.51
SVM decision value 0.22
SVM RNA-class probability 0.638274
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1306129 94 - 22224390
GGCCGAAA--CAAG--UCGUCG-AAAGC-UCAAUAGGCGGCAUUGGU-AAACAAAAUGGAGUCAUUCGCG-UGACCCA-AACUCCGCCAUAU-CAGCCA-ACGUG
(((.((..--....--..(.(.-...))-......(((((..(((..-...)))..(((.(((((....)-)))))))-....)))))...)-).))).-..... ( -25.80)
>DroVir_CAF1 50824 97 - 1
---GGAAA--GAAA--UUGGCAAAAAGCCCAAAUAGACGGCAUUGGC-AAACAAAAUGGCGUCAUCCAAGAUGACCCGUUACUCCGCCAUAUUCAGCUUUUUGUU
---.....--....--..((((((((((...((((...(((.(((..-...)))(((((.((((((...))))))))))).....))).))))..)))))))))) ( -27.90)
>DroPse_CAF1 59031 95 - 1
GGUUGAAA--UAUGUUUCGGCA-AAAGC-UUAAUAGACGGCAUUGGC-AAACAAAAUGGCGUCAUGCAUG-UGACCCGUUAAUCCGCCAUAU-UAGCU---CCUG
.(((((((--....))))))).-..(((-(.((((...(((.(((..-...)))(((((.(((((....)-))))))))).....))).)))-)))))---.... ( -26.00)
>DroYak_CAF1 38705 94 - 1
GGCCGAAA--CAAG--UCGUCG-AAAGC-UCAAUAGGCGGCAUUGGU-AAACAAAAAGGAGUCAUUCGCG-UGACCCU-AACUCCGCCAUAU-CAGCCA-ACGUC
(((.((..--....--..(.(.-...))-......(((((..(((..-...)))..(((.(((((....)-)))))))-....)))))...)-).))).-..... ( -25.70)
>DroMoj_CAF1 57072 98 - 1
---GGAAAACGAAA--GCAACAAAAAGCGCGAAUAGACGGCAUUGGCUAAACAAAAUGGCGUCAUCCAAG-UGACCCGUUACUCCGCCAUAUUCAGCUU-UUGUU
---......(....--).(((((((.((..(((((...(((.(((......)))(((((.(((((....)-))))))))).....))).))))).))))-))))) ( -27.10)
>DroPer_CAF1 58721 95 - 1
GGUUGAAA--UAUGUUUCGGCA-AAAGC-UUAAUAGACGGCAUUGGC-AAACAAAAUGGCGUCAUGCAUG-UGACCCGUUACUCCGCCAUAU-UAGCU---CCUG
.(((((((--....))))))).-..(((-(.((((...(((.(((..-...)))(((((.(((((....)-))))))))).....))).)))-)))))---.... ( -26.00)
>consensus
GG_CGAAA__CAAG__UCGGCA_AAAGC_UCAAUAGACGGCAUUGGC_AAACAAAAUGGCGUCAUCCAAG_UGACCCGUUACUCCGCCAUAU_CAGCU___CGUG
..........................((....(((...(((.(((......)))(((((.((((.......))))))))).....))).)))...))........ (-13.42 = -13.70 +   0.28) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:43 2006