Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,306,129 – 1,306,223 |
Length | 94 |
Max. P | 0.638274 |
Location | 1,306,129 – 1,306,223 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 76.70 |
Mean single sequence MFE | -26.42 |
Consensus MFE | -13.42 |
Energy contribution | -13.70 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.84 |
Structure conservation index | 0.51 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1306129 94 - 22224390 GGCCGAAA--CAAG--UCGUCG-AAAGC-UCAAUAGGCGGCAUUGGU-AAACAAAAUGGAGUCAUUCGCG-UGACCCA-AACUCCGCCAUAU-CAGCCA-ACGUG (((.((..--....--..(.(.-...))-......(((((..(((..-...)))..(((.(((((....)-)))))))-....)))))...)-).))).-..... ( -25.80) >DroVir_CAF1 50824 97 - 1 ---GGAAA--GAAA--UUGGCAAAAAGCCCAAAUAGACGGCAUUGGC-AAACAAAAUGGCGUCAUCCAAGAUGACCCGUUACUCCGCCAUAUUCAGCUUUUUGUU ---.....--....--..((((((((((...((((...(((.(((..-...)))(((((.((((((...))))))))))).....))).))))..)))))))))) ( -27.90) >DroPse_CAF1 59031 95 - 1 GGUUGAAA--UAUGUUUCGGCA-AAAGC-UUAAUAGACGGCAUUGGC-AAACAAAAUGGCGUCAUGCAUG-UGACCCGUUAAUCCGCCAUAU-UAGCU---CCUG .(((((((--....))))))).-..(((-(.((((...(((.(((..-...)))(((((.(((((....)-))))))))).....))).)))-)))))---.... ( -26.00) >DroYak_CAF1 38705 94 - 1 GGCCGAAA--CAAG--UCGUCG-AAAGC-UCAAUAGGCGGCAUUGGU-AAACAAAAAGGAGUCAUUCGCG-UGACCCU-AACUCCGCCAUAU-CAGCCA-ACGUC (((.((..--....--..(.(.-...))-......(((((..(((..-...)))..(((.(((((....)-)))))))-....)))))...)-).))).-..... ( -25.70) >DroMoj_CAF1 57072 98 - 1 ---GGAAAACGAAA--GCAACAAAAAGCGCGAAUAGACGGCAUUGGCUAAACAAAAUGGCGUCAUCCAAG-UGACCCGUUACUCCGCCAUAUUCAGCUU-UUGUU ---......(....--).(((((((.((..(((((...(((.(((......)))(((((.(((((....)-))))))))).....))).))))).))))-))))) ( -27.10) >DroPer_CAF1 58721 95 - 1 GGUUGAAA--UAUGUUUCGGCA-AAAGC-UUAAUAGACGGCAUUGGC-AAACAAAAUGGCGUCAUGCAUG-UGACCCGUUACUCCGCCAUAU-UAGCU---CCUG .(((((((--....))))))).-..(((-(.((((...(((.(((..-...)))(((((.(((((....)-))))))))).....))).)))-)))))---.... ( -26.00) >consensus GG_CGAAA__CAAG__UCGGCA_AAAGC_UCAAUAGACGGCAUUGGC_AAACAAAAUGGCGUCAUCCAAG_UGACCCGUUACUCCGCCAUAU_CAGCU___CGUG ..........................((....(((...(((.(((......)))(((((.((((.......))))))))).....))).)))...))........ (-13.42 = -13.70 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:43 2006