Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,703,035 – 11,703,149 |
Length | 114 |
Max. P | 0.656738 |
Location | 11,703,035 – 11,703,149 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.58 |
Mean single sequence MFE | -28.32 |
Consensus MFE | -17.28 |
Energy contribution | -18.12 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.17 |
Mean z-score | -2.07 |
Structure conservation index | 0.61 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656738 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11703035 114 - 22224390 AAUUUCCUUUCGAUACCAGACGUUAUUUGUCCAAACCUAUCGAAGCCUAUCGGUUCUCGAUAUCUGCACGCGCCAAUCGGUGC--AAAGCUUUUGGUAUUUUU--UAUUACCUAUUGA-- ...........(((((((((.(((....((.((....((((((((((....)))).))))))..)).))(((((....)))))--..))).)))))))))...--.............-- ( -28.90) >DroSec_CAF1 3605 110 - 1 AAUUUCCUUUCGAUACCAGACGUUUUUUGUCCGAACCUAUCGAAGCCUAUCGGUUCUCGAUAUCUGC----GCCAAACGGUGC--AAAGCUUUUGGUAUUUUU--UAUUACCUAUUGA-- ...........(((((((((.(((((...........((((((((((....)))).))))))...((----(((....)))))--))))).)))))))))...--.............-- ( -29.50) >DroSim_CAF1 2731 114 - 1 AAUUUCCUUUCGAUACCAGACGUUAUUUGUCCGAACCUAUCGAAGCCUAUCGGUUCUCGAUAUCUGCACUCGCCAAUCGGUGC--AAAGCUUUCGGUAUUUUU--UAUUACCUAUUGA-- ...........((((((.((((.....)))).(((..((((((((((....)))).))))))..(((((.((.....))))))--).....)))))))))...--.............-- ( -26.00) >DroEre_CAF1 3958 118 - 1 AAUUUGCGUUCGAUACCAGACGUAAUUGGCCCGAACCUAUCGGAGU-UAUCGGUUCCCAGUAUCUGGCC-CGGCUAUCGGUGCGCUAAGCUUUUGGUAUUUUUUGUAUUACCGAUUUUUC .....((((((((((((.........((((((((.....)))).))-))..((...((((...)))).)-))).)))))).)))).......((((((..........))))))...... ( -29.40) >DroYak_CAF1 3966 115 - 1 AACUUCCUUUCGAUACCAGACGUAAUCUGUCCGAGCUUAUCGGAGUCUAUCGGUUUCCGAUAUUUGUCCGCGGCUAUCGGUGC---AAGCUUUUGGUAUUUUU--UAUUACAUAUUUUCU ...........(((((((((.((....((((((((((...((((...((((((...))))))....)))).)))..)))).))---).)).)))))))))...--............... ( -27.80) >consensus AAUUUCCUUUCGAUACCAGACGUUAUUUGUCCGAACCUAUCGAAGCCUAUCGGUUCUCGAUAUCUGCAC_CGCCAAUCGGUGC__AAAGCUUUUGGUAUUUUU__UAUUACCUAUUGA__ ...........(((((((((.(((....((((((...((((((((((....)))).))))))...((....))...)))).))....))).))))))))).................... (-17.28 = -18.12 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:49 2006