Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,688,879 – 11,688,982 |
Length | 103 |
Max. P | 0.608008 |
Location | 11,688,879 – 11,688,982 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 86.89 |
Mean single sequence MFE | -33.70 |
Consensus MFE | -23.16 |
Energy contribution | -24.73 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.66 |
Structure conservation index | 0.69 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11688879 103 - 22224390 ACGGCACGCAACUACCGAUGGCCGUCCGUCGAUAGGCAGGCGCUAUCGAGAUGAGCUAGAUACCGAUGUGGGCUAUAUCGAUACAUUGCUUAAACUUUCGAUU ......(((..(((.((((((....)))))).)))....)))..((((((((((((....((.(((((((...))))))).))....)))))...))))))). ( -28.60) >DroSec_CAF1 2086 103 - 1 ACGGCACGCAACUAGCGAUGGCCGUCCGUCGAUAGGCAGGCUUUGUCGAGAUGAGCGAGAUACCCAUGUAGGGUAUAUCGAUACAUUGCUUAAACUUUCGAUU ..(((.(((.....)))...)))(((.(((....))).)))...((((((((((((((.((((((.....)))))).........)))))))...))))))). ( -33.50) >DroSim_CAF1 3246 103 - 1 ACGGCACGCAACUAGCGAUGGCCGUCCAUCGAUAGGCAGGCUUUGUCGAGAUGAGCGAGAUACCCAUGUAGGGUAUAUCGAUACAUUGCUUAAACUUUCGAUU (((((.(((.....)))...)))))..(((((.((..((((..(((.........(((.((((((.....)))))).)))..)))..))))...)).))))). ( -33.20) >DroYak_CAF1 2173 100 - 1 ACGGCACGCAACUAGCGAUGGCCGUAAGCCGAUAGACAGGCGCUCUCGAGAUGUCCGA--UA-CCACGUUGGGCAUUUCGAUAUAUCGCUGAAGCUUUCGAUU (((((.(((.....)))...)))))....(((.((...((((...(((((((((((((--(.-....)))))))))))))).....))))....)).)))... ( -39.50) >consensus ACGGCACGCAACUAGCGAUGGCCGUCCGUCGAUAGGCAGGCGCUGUCGAGAUGAGCGAGAUACCCAUGUAGGGUAUAUCGAUACAUUGCUUAAACUUUCGAUU (((((.(((.....)))...)))))..(((((.((..(((((.((((((.(((..(((.((....)).)))..))).))))))...)))))...)).))))). (-23.16 = -24.73 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:48 2006