Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,655,145 – 11,655,248 |
Length | 103 |
Max. P | 0.988463 |
Location | 11,655,145 – 11,655,248 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 96.49 |
Mean single sequence MFE | -18.68 |
Consensus MFE | -16.40 |
Energy contribution | -16.60 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.03 |
Structure conservation index | 0.88 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988463 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11655145 103 + 22224390 AUUACCUCAUUUCUAUCUAUAUGUGGCGAAAUACCCGUUUAAUCAAUUGCCACCACACGUGGAAAAGUUUUGCCAACUGCAUAUGUAUAUUCAUUAUGCAUUU .......................(((((((((....(......).....((((.....))))....)))))))))..((((((((......)).))))))... ( -19.10) >DroSec_CAF1 28388 99 + 1 AUUACCUCAUUUCUAUCUAUAUGUGGCGAAAUACCCGUUUAAUCAAUUGCCACCACACGUGGAAAAGUUUUGCCAACUGCAUA----UAUUCAUUAUGCAUUU .......................(((((((((....(......).....((((.....))))....)))))))))..((((((----.......))))))... ( -18.80) >DroSim_CAF1 24895 99 + 1 AUUACCUCAUUUCUAUCUAUAUGUGGCGAAAUACCCGUUUAAUCAAUUGCCACCACACGUGGAAAAGUUUUGCCAACUGCAUA----UAUUCAUUAUGCAUUU .......................(((((((((....(......).....((((.....))))....)))))))))..((((((----.......))))))... ( -18.80) >DroEre_CAF1 32231 103 + 1 AUUACCUCAUUUCUAUCUAUAUAUGGCGAAAUACCCGUUUAAUCAAUUGCCACCACACGUGGAAAAGUUUUGCCAACUGCAUAUGUAUAUUCAUUAUGCAUUU .......................(((((((((....(......).....((((.....))))....)))))))))..((((((((......)).))))))... ( -19.20) >DroYak_CAF1 27837 103 + 1 AUUACCUCAUUUCUAUCUAUAUGUGGCGAAAUACCCGUUUAAUCAAUUGCAACCACACGUGGAAAAGUUUUGCCAACUGCAUAUAAAUAUUCAUUAUGCAUUU .......................(((((((((....((..........))..(((....)))....)))))))))..((((((...........))))))... ( -17.50) >consensus AUUACCUCAUUUCUAUCUAUAUGUGGCGAAAUACCCGUUUAAUCAAUUGCCACCACACGUGGAAAAGUUUUGCCAACUGCAUAU__AUAUUCAUUAUGCAUUU .......................(((((((((....(......).....((((.....))))....)))))))))..((((((...........))))))... (-16.40 = -16.60 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:39 2006