Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,651,891 – 11,651,984 |
Length | 93 |
Max. P | 0.997650 |
Location | 11,651,891 – 11,651,984 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 98.49 |
Mean single sequence MFE | -25.18 |
Consensus MFE | -23.48 |
Energy contribution | -23.24 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.29 |
Structure conservation index | 0.93 |
SVM decision value | 2.90 |
SVM RNA-class probability | 0.997650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11651891 93 + 22224390 AGUGUUGUUGUGUUUCAGCUGCUGCUGAUUCAACCAGCGAACAGCAACAACAACGCAAGUGGUAAGUUCUUCAUCUUCUUCUUCUAGUUGUUU .(((((((((((..(((((....)))))..).....((.....)).))))))))))(((.((.(((........))))).))).......... ( -25.70) >DroSec_CAF1 25226 93 + 1 AGUGUUGUUGUGUUUCAGCUGCUGCUGAUUCAACCAGCGAACAGCAACAACAACGCAAGUGGUAAGUUCUUCCUCUUCUUCUUCUAGUUGUUU .(((((((((((..(((((....)))))..).....((.....)).))))))))))(((.((.........)).)))................ ( -25.90) >DroSim_CAF1 21306 93 + 1 AGUGUUGUUGUGUUUCAGCUGCUGCUGAUUCAACCAGCGAACAGCAACAACAACGCAAGUGGUAAGUUCUUCCUCUUCUUCUUCUAGUUGUUU .(((((((((((..(((((....)))))..).....((.....)).))))))))))(((.((.........)).)))................ ( -25.90) >DroEre_CAF1 27413 93 + 1 AGUGUUGUUGUGUUUCAGCUGCUGCUGAUUCAACCAACGAACAGCAACAACAACGCAAGUGGUAAGUUCUUCCUCUUCUUCUUCUAGUUGUUU .((.((((((((..(((((....)))))..))..))))))...))...((((((..(((.((.(((........))))).)))...)))))). ( -23.40) >DroYak_CAF1 24685 93 + 1 AGUGUUGUUGUGCUUCAGCUGCUGCUGAUUCAACCAACGAACAGCAACAACAACGCAAGUGGUAAGUUCUUCCUCUUCUUCUUCUAGUUGUUU .((((((((((((((((((....)))))(((.......))).))).))))))))))(((.((.........)).)))................ ( -25.00) >consensus AGUGUUGUUGUGUUUCAGCUGCUGCUGAUUCAACCAGCGAACAGCAACAACAACGCAAGUGGUAAGUUCUUCCUCUUCUUCUUCUAGUUGUUU .((.((((((((..(((((....)))))..))..))))))...))...((((((..(((.((.(((........))))).)))...)))))). (-23.48 = -23.24 + -0.24)
Location | 11,651,891 – 11,651,984 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 98.49 |
Mean single sequence MFE | -23.62 |
Consensus MFE | -23.08 |
Energy contribution | -23.04 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.85 |
Structure conservation index | 0.98 |
SVM decision value | 2.35 |
SVM RNA-class probability | 0.992813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11651891 93 - 22224390 AAACAACUAGAAGAAGAAGAUGAAGAACUUACCACUUGCGUUGUUGUUGCUGUUCGCUGGUUGAAUCAGCAGCAGCUGAAACACAACAACACU .......................................((((((((.((((((.((((((...))))))))))))......))))))))... ( -23.20) >DroSec_CAF1 25226 93 - 1 AAACAACUAGAAGAAGAAGAGGAAGAACUUACCACUUGCGUUGUUGUUGCUGUUCGCUGGUUGAAUCAGCAGCAGCUGAAACACAACAACACU ................(((.((((....)).)).)))..((((((((.((((((.((((((...))))))))))))......))))))))... ( -24.80) >DroSim_CAF1 21306 93 - 1 AAACAACUAGAAGAAGAAGAGGAAGAACUUACCACUUGCGUUGUUGUUGCUGUUCGCUGGUUGAAUCAGCAGCAGCUGAAACACAACAACACU ................(((.((((....)).)).)))..((((((((.((((((.((((((...))))))))))))......))))))))... ( -24.80) >DroEre_CAF1 27413 93 - 1 AAACAACUAGAAGAAGAAGAGGAAGAACUUACCACUUGCGUUGUUGUUGCUGUUCGUUGGUUGAAUCAGCAGCAGCUGAAACACAACAACACU ................(((.((((....)).)).)))..((((((((.((((((.((((((...))))))))))))......))))))))... ( -22.40) >DroYak_CAF1 24685 93 - 1 AAACAACUAGAAGAAGAAGAGGAAGAACUUACCACUUGCGUUGUUGUUGCUGUUCGUUGGUUGAAUCAGCAGCAGCUGAAGCACAACAACACU ................(((.((((....)).)).)))..((((((((.(((.((((.....))))(((((....))))))))))))))))... ( -22.90) >consensus AAACAACUAGAAGAAGAAGAGGAAGAACUUACCACUUGCGUUGUUGUUGCUGUUCGCUGGUUGAAUCAGCAGCAGCUGAAACACAACAACACU ................(((.((((....)).)).)))..((((((((.((((((.((((((...))))))))))))......))))))))... (-23.08 = -23.04 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:29 2006