Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,650,277 – 11,650,397 |
Length | 120 |
Max. P | 0.780595 |
Location | 11,650,277 – 11,650,397 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.17 |
Mean single sequence MFE | -39.82 |
Consensus MFE | -34.48 |
Energy contribution | -34.32 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.46 |
Structure conservation index | 0.87 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11650277 120 + 22224390 UGUGGCUGUUGUGCAAAAAUAUGCCGCUGGACAGGAUUAGAGUAAUGCUGCGGCGAACGGGAGCGAUCAUGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA .....((((((..(.......((((((.((.((..((....))..))))))))))......((((((.(((((.((((((((.......)))).))))))))).)))))))..)))))). ( -38.80) >DroSec_CAF1 23617 120 + 1 UGUGGCUGUUGUGCAAAAAUAUGCCGCUGGACAGGAUUAGAGGAAUGCUGCGGCGAACGGGAGCGAUCAUGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA .....((((((..(((...((((..(((.(((((.(((.....))).)).((((....(((((((........))))).))......))))))).)))..))))....)))..)))))). ( -37.40) >DroSim_CAF1 19736 120 + 1 UGUGGCUGUUGUGCAAAAAUAUGCCGCUGGACAGGAUUAGAGGAAUGCUGCGGCGAACGGGAGCGAUCAUGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA .....((((((..(((...((((..(((.(((((.(((.....))).)).((((....(((((((........))))).))......))))))).)))..))))....)))..)))))). ( -37.40) >DroEre_CAF1 24164 120 + 1 UGUGGCUGUUGUGCAGAAAUAUGCCGCUGGACAGGAUUAGAGGAAUCCUGGGGCAAAUGGGAGCGACCACGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA .....((((((..(((...((((..(((.(((((((((.....))))))(((.....((((((((........))))).))).))).....))).)))..))))....)))..)))))). ( -42.60) >DroYak_CAF1 23112 120 + 1 UGUGGCUGUUGUGCAAAAAUAUGCCGCUGGACAGGAUUAGAUGAAUCCUGGGGCAAAUGGGAGCGAUCACGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA .....((((((..(((...((((..(((.(((((((((.....))))))(((.....((((((((........))))).))).))).....))).)))..))))....)))..)))))). ( -42.90) >consensus UGUGGCUGUUGUGCAAAAAUAUGCCGCUGGACAGGAUUAGAGGAAUGCUGCGGCGAACGGGAGCGAUCAUGAACGCUUACCAACCCAGCUGGUCGAGCUUUAUAAUUGUUGUGCGACAGA .....((((((..(((......((((((((.(((.(((.....))).)))........(((((((........))))).))...))))).)))(((.........))))))..)))))). (-34.48 = -34.32 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:25 2006