Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,649,138 – 11,649,236 |
Length | 98 |
Max. P | 0.653825 |
Location | 11,649,138 – 11,649,236 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 80.83 |
Mean single sequence MFE | -32.77 |
Consensus MFE | -27.97 |
Energy contribution | -27.67 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.18 |
Mean z-score | -1.29 |
Structure conservation index | 0.85 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11649138 98 - 22224390 GGAAAUCGGC------UUCAAGAUGCGGGUAGUGGCCAUGGUCAGUGGCGGCAAGGACAGCUGCUACAACAUGAUGCAGUGCGUCGCCGAGGGCCACGAAAUCG .((.(((.((------........)).))).((((((.((((..((((((((.......)))))))).....(((((...)))))))))..))))))....)). ( -38.70) >DroVir_CAF1 29714 98 - 1 CACACACACAUA------CAAAAUGCGCGUAGUAGCAAUGGUAAGUGGCGGCAAGGAUAGCUGCUACAAUAUGAUGCAGUGCGUCGCCGAGGGUCACGAAAUUG ...((.(.(((.------....))).).)).((..(..((((..((((((((.......)))))))).....(((((...)))))))))...)..))....... ( -25.60) >DroPse_CAF1 23661 88 - 1 ----------------ACCAAGAUGCGGGUCGUGGCCAUGGUCAGUGGCGGCAAGGAUAGCUGCUACAACAUGAUGCAAUGCGUUGCCGAGGGCCAUGAAAUCG ----------------.....(((.....((((((((.((((..((((((((.......)))))))).....(((((...)))))))))..)))))))).))). ( -34.80) >DroGri_CAF1 25912 100 - 1 CCCAUCCAUCUA----AUCAAAAUGCGCGUUGUGGCAAUGGUGAGUGGCGGCAAGGAUAGCUGCUACAAUAUGAUGCAGUGCGUCGCCGAGGGCCACGAAAUUG ............----.............(((((((..((((..((((((((.......)))))))).....(((((...)))))))))...)))))))..... ( -33.10) >DroMoj_CAF1 21874 104 - 1 CACACACAGAUAGGUCAUCAAGAUGCGCGUGGUGGCAAUGGUGAGUGGCGGCAAGGAUAGCUGCUACAACAUGAUGCAGUGCGUCGCCGAGGGUCACGAAAUUG (((.(.((.....(....)....)).).)))(((((..((((..((((((((.......)))))))).....(((((...)))))))))...)))))....... ( -31.90) >DroAna_CAF1 25519 86 - 1 ------------------CAAGAUGCGGGUCGUGGCCAUGGUCAGCGGCGGCAAGGAUAGUUGCUACAACAUGAUGCAGUGCGUCGCCGAGGGCCACGAGAUCG ------------------.......(((.((((((((.((((..(..(((((.......)))))..).....(((((...)))))))))..))))))))..))) ( -32.50) >consensus C_CA__CA________AUCAAGAUGCGCGUAGUGGCAAUGGUCAGUGGCGGCAAGGAUAGCUGCUACAACAUGAUGCAGUGCGUCGCCGAGGGCCACGAAAUCG ...............................(((((..((((..((((((((.......)))))))).....(((((...)))))))))...)))))....... (-27.97 = -27.67 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:24 2006