Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,634,398 – 11,634,518 |
Length | 120 |
Max. P | 0.920176 |
Location | 11,634,398 – 11,634,518 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.89 |
Mean single sequence MFE | -23.22 |
Consensus MFE | -20.32 |
Energy contribution | -20.32 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.13 |
Mean z-score | -1.93 |
Structure conservation index | 0.87 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920176 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11634398 120 - 22224390 UUUCAAAAAUUCUCUAACACAACAUCAAAUAUUUAAAGUACAAGUAUAAAUAGUUUCAUAUUUGAAGUGCGUCAACUUUAAAGUAGCACAUUUGAUGCACUCGAAUGUUAAAUAGGGAAA .........((((((.............((((((.......)))))).....((((.((((((((.(((((((((................))))))))))))))))).)))))))))). ( -24.49) >DroSec_CAF1 7716 120 - 1 UUUCAAAAAUUUUCUAACACAGCAUCCAAUAUUUAAAGUACAAGUAUAAAUAGUUUGGUAUUUGAAGUGCGUCAACUUUAAAUUAGCACAUUUGAUGCACUCGAAUGGUAAAUAGGAAAA ........................(((.((((((.......)))))).....(((((.(((((((.(((((((((................)))))))))))))))).))))).)))... ( -24.39) >DroSim_CAF1 7022 115 - 1 UUUCAAAAAUUCUCGAAC-----AUCAAAUAUUUAAAGUACAAGUAUAAAUAGUUUGGUAUUUGAAGUGCGUCAACUUUGAAUUAGCACAUUUGAUGCACUCGAAUGGUAAAUAGGAAAA ((((..............-----.....((((((.......)))))).....(((((.(((((((.(((((((((.(.((......)).).)))))))))))))))).)))))..)))). ( -23.80) >DroEre_CAF1 8219 120 - 1 UUCUGAAAAUUCUUAAACACAACAUGAAAUAUUAAAAAUACAAGUAUAAAUAGUUUGGUAUUUGAAGUGCGUCCACUUGAAAGUAGCACAUUUGAUGCACUCGAAUAGUAAAUAGGAAAG .........(((((..............(((((.........))))).....(((((.(((((((.(((((((....((.........))...)))))))))))))).)))))))))).. ( -20.20) >consensus UUUCAAAAAUUCUCUAACACAACAUCAAAUAUUUAAAGUACAAGUAUAAAUAGUUUGGUAUUUGAAGUGCGUCAACUUUAAAGUAGCACAUUUGAUGCACUCGAAUGGUAAAUAGGAAAA ((((........................((((((.......)))))).....(((((.(((((((.(((((((((................)))))))))))))))).))))).)))).. (-20.32 = -20.32 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:23 2006