Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,592,240 – 11,592,335 |
Length | 95 |
Max. P | 0.950756 |
Location | 11,592,240 – 11,592,335 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 72.10 |
Mean single sequence MFE | -34.73 |
Consensus MFE | -20.89 |
Energy contribution | -21.45 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -1.81 |
Structure conservation index | 0.60 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950756 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11592240 95 + 22224390 AUGUUAGCUUUUCGUCUGUGCAUCCGAUGAUAAGCAGCUGGAUGUCUUGCUGGCU----------------GGCUGACUGUCUGGGCUUGGCUCUGCCGUCGAGACGGUC-U ..(((((((....((..(.(((((((.((.....))..))))))))..)).))))----------------))).((((((((.(((..(((...)))))).))))))))-. ( -36.50) >DroEre_CAF1 24373 82 + 1 AAGUUAGCUAUUCGUCUGUGCAUCCGAUGAUAAGCAGCUGGAUGGCUAGAUGGCU-----------------------------GGGAUGGCUGUGCCGUCGAGACGGUC-U ...(((((((((((.((((..(((....)))..)))).)))))))))))..((((-----------------------------(.((((((...))))))....)))))-. ( -31.60) >DroYak_CAF1 24589 112 + 1 AUGUUGGCUUUUCGUCUGUGCAUCCGAUGAUAAGCAGCUGGAGGGCUAGAUGGCUAUGUGGCAAGGUGGCAAGGUGGCAGACUGGGCUUGGUUGUGCCGUCGAGACGGUAAU ...(((((((((((.((((..(((....)))..)))).)))))))))))(..((((...(((..(((.((......))..)))..)))))))..)(((((....)))))... ( -36.10) >consensus AUGUUAGCUUUUCGUCUGUGCAUCCGAUGAUAAGCAGCUGGAUGGCUAGAUGGCU_________________G_UG_C_G_CUGGGCUUGGCUGUGCCGUCGAGACGGUC_U ..((((((((((((.((((..(((....)))..)))).))))))))).((((((.........................................))))))..)))...... (-20.89 = -21.45 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:02 2006