| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,590,158 – 11,590,255 |
| Length | 97 |
| Max. P | 0.944419 |
| Location | 11,590,158 – 11,590,255 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 78.75 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -16.75 |
| Energy contribution | -16.03 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.62 |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.944419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11590158 97 + 22224390 CCAAGUA----------GAUGGAG--AAGUGAGUGGUA---GCGGUGC-AAAUGCAUUUGAUCCGUUUUGGAGCGCAUUAAAUGCACCGUUAACUACUUCGAAUUCUAAUUAA (((....----------..)))((--((..((((((((---(((((((-((((((.((..(......)..))..)))))...))))))))).)))))))....))))...... ( -32.90) >DroVir_CAF1 26710 90 + 1 ACACACU----------GAG--AG--AAACGA---------UCGGUGUUAAAUGCAUCUGAUCCGUCUUGGAGCGCAUUAAAUACACCGUUAACUACUUCGAAUUCUAAUCAA ......(----------((.--((--((.(((---------.((((((..(((((.((..(......)..))..)))))....)))))).........)))..))))..))). ( -19.30) >DroPse_CAF1 26151 106 + 1 GCAAGUGUGCUGGCGCUGAU-GAG--AAGUGAGUGGUA---GCGGUGU-UGAUGCAUUUGAUCCGUUUUGGAGCGCAUUAAAUGCACCGUUAACUACUUCGAAUUCUAAUUAA ...(((((....)))))(((-.((--((..((((((((---(((((((-((((((.((..(......)..))..))))))...)))))))).)))))))....)))).))).. ( -34.10) >DroGri_CAF1 30019 92 + 1 ACACACA----------GAGGCAG--AAGAGA---------UCGGUGUUAAAUGCAUUUGAUCCGUCUUGGAGCGCAUUAAAUGCACCGUUAACUACCUCGAAUUCUAAUCAA .......----------((...((--((..((---------..((((((((.((((((((((.(((......))).))))))))))...))))).)))))...))))..)).. ( -24.00) >DroMoj_CAF1 30278 90 + 1 AUACACU----------GAG--CG--AAAAGA---------UCGGUGUUAAAUGCAUUUGAUCCGUCUUGGAGCGCAUUAAAUGCACCGUUAACUACUUCGAAUUCUAAUCAA .......----------...--.(--(..(((---------((((.(((((.((((((((((.(((......))).))))))))))...)))))....))))..)))..)).. ( -20.80) >DroAna_CAF1 30612 101 + 1 -CAAGUA----------UCUGCAGACAAGUGAGUGGUAAGAGCGGUGC-UAAUGCAUCUGAUCCGUUUUGGAGCGCAUUAAAUGCACCGUUAACUACUUCGAAUUCUAAUUAA -......----------.....(((.....(((((((...((((((((-((((((.((..(......)..))..))))))...)))))))).))))))).....)))...... ( -30.80) >consensus ACAAACA__________GAG__AG__AAGUGA_________GCGGUGU_AAAUGCAUUUGAUCCGUCUUGGAGCGCAUUAAAUGCACCGUUAACUACUUCGAAUUCUAAUCAA ..........................................((((((..(((((.((..(......)..))..)))))....))))))........................ (-16.75 = -16.03 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:01 2006