Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,293,894 – 1,294,009 |
Length | 115 |
Max. P | 0.778445 |
Location | 1,293,894 – 1,294,009 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 88.55 |
Mean single sequence MFE | -28.07 |
Consensus MFE | -24.95 |
Energy contribution | -23.20 |
Covariance contribution | -1.75 |
Combinations/Pair | 1.28 |
Mean z-score | -1.59 |
Structure conservation index | 0.89 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778445 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1293894 115 - 22224390 AUCAAGAGAACUUUCAUCCUUAUGAGUUUUGGCAAUGGAUUCUCGUCGACUCUCUGCUUUUCCUGCUUCGUCUUUGACGCUUUCCGCUACAGAUUCCGGUCGAGAAGCUUCUCCU .....((((((((((..((....((((((((((...(((....((((((......((.......)).......))))))...))))))).)))))).))..))).)).))))).. ( -25.42) >DroSec_CAF1 26555 115 - 1 AUCAAGAGAACUUUCAUCCUUAUGAGUUUUGACAAUGGAUUCUCGUCGACUCUCUGCUUUUCCUGCUUCAUCUUUGACGCUUUCCGCUACAGAUUCCGGUCGAGAAACUUCUCCU .....(((((.((((........((((((.......))))))...((((((.((((........((.(((....))).)).........))))....)))))))))).))))).. ( -24.23) >DroEre_CAF1 28074 115 - 1 GUCAAGAGAACUUUCAUCCUUGUGAGUUUCGGCAACGGAUUCUCGUCGACUCUCCGGUUUUGCUGCUUCAUCUUUGACGCUUUCCGCAACGGAUUCCGGUCGAGAAACUUCUUUU ...(((((((.((((........(((.((((....))))..))).((((((.((((...((((.((.(((....))).)).....))))))))....)))))))))).))))))) ( -33.60) >DroYak_CAF1 27148 115 - 1 AUCAGAAGAACUUUCAUCCUUAGGAGUUUUGGCAAGUGAUUCUCGUCGGCUCUCUGAUUUUCCUGCAUCAUCUUUGAUGUUUUCCGUAACAGAUCCCGGUCGAGAAACUUCUUUU ...(((((.((((((((((...)))....))).))))..((((((((((...((((........((((((....)))))).........))))..)))).)))))).)))))... ( -29.03) >consensus AUCAAGAGAACUUUCAUCCUUAUGAGUUUUGGCAAUGGAUUCUCGUCGACUCUCUGCUUUUCCUGCUUCAUCUUUGACGCUUUCCGCAACAGAUUCCGGUCGAGAAACUUCUCCU .....(((((.((((........(((..((.......))..))).((((((.((((........((.(((....))).)).........))))....)))))))))).))))).. (-24.95 = -23.20 + -1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:36 2006