Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 202,237 – 202,330 |
Length | 93 |
Max. P | 0.813639 |
Location | 202,237 – 202,330 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 86.74 |
Mean single sequence MFE | -19.46 |
Consensus MFE | -13.51 |
Energy contribution | -14.57 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.13 |
Structure conservation index | 0.69 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.813639 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 202237 93 + 22224390 AAAGGAUUCGGUCCGAUUACUUUAAAUUUAGUUGGAU----UUAUAACAUUCUGUUUUUAAUGUCUAAUUUUACUAUCUACCUAGAACCGAGUC-CAC ...(((((((((.(...............((((((((----....(((.....)))......))))))))..............).))))))))-).. ( -21.35) >DroSec_CAF1 33201 93 + 1 AAAAGAUUCGGUCCGAUUCCUUUAAAUUUAGUUGGAU----UUAUAACAUUCUGUUGUUAAUGUCUAAUUUUAAUAUCUACCUAGAACCGAGUC-CAC ....((((((((.(...............((((((((----...(((((......)))))..))))))))..............).))))))))-... ( -20.55) >DroSim_CAF1 34298 93 + 1 AAAAGAUUCGGUCCGAUUCCUUUAAAUUUAGUUGGAU----UUAUAACAUUCUGUUGUUAAUGUCUAAUUUUAAUAUCUACCUAGAACCGAGUC-CAC ....((((((((.(...............((((((((----...(((((......)))))..))))))))..............).))))))))-... ( -20.55) >DroYak_CAF1 32670 94 + 1 AAAUGCUUCGGUG----UACUUCCAAUUUAGUUGGAUCAUUGUAUGACAUUCUGUUUUUAAAGACUAAAUUUAACAUCUAGCUAGAACCGAGUCCCAC ......((((((.----.........((((((((((....(((.(((.(((..((((....))))..)))))))))))))))))))))))))...... ( -15.40) >consensus AAAAGAUUCGGUCCGAUUACUUUAAAUUUAGUUGGAU____UUAUAACAUUCUGUUGUUAAUGUCUAAUUUUAAUAUCUACCUAGAACCGAGUC_CAC ....((((((((.................((((((((......(((((.....)))))....))))))))......(((....))))))))))).... (-13.51 = -14.57 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:12 2006