Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,587,747 – 11,587,843 |
Length | 96 |
Max. P | 0.500000 |
Location | 11,587,747 – 11,587,843 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 79.68 |
Mean single sequence MFE | -22.15 |
Consensus MFE | -16.30 |
Energy contribution | -16.13 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.23 |
Mean z-score | -1.00 |
Structure conservation index | 0.74 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11587747 96 + 22224390 GAA----UGUAUUUUUAUUGAAGUGCUAGAUGUAAGUUUCUUUUUAUUGGUCGUCUAAUUGGCAGGCUAUUCUAUGUCAUUAGGCCGCUUGAUUAGCGCC-- ...----.(((((((....)))))))((((((..(((........)))...))))))...(((.((((..............))))(((.....))))))-- ( -20.24) >DroSec_CAF1 19561 100 + 1 GAAUGUAUGUAUUUUUAUUGAAGUGCUAGAUGUAAGUUUCUUUUUAUUGGUCGUCUAAUUGGCAGGCUAUUCUAUGUCAUUAGGCCGCUUGAUUAGCGCC-- ........(((((((....)))))))((((((..(((........)))...))))))...(((.((((..............))))(((.....))))))-- ( -20.24) >DroSim_CAF1 18533 100 + 1 NAAUGUAUGUAUUUUUAUUGAAGUGCUAGAUGUAAGUUUCUUUUCAUUGGUCGUCUAAUUGGCAGGCUAUUCUAUGUCAUUAGGCCGCUUGAUUAGCGCC-- ......................((((((((((.(((.....)))))))(((.(((((((.((((..........))))))))))).)))....)))))).-- ( -19.90) >DroEre_CAF1 19352 91 + 1 GAU----UGGAUUUUUUUGGAAAUGCUAGAUGUUAGUUUUUGUUUAUUGUCUGCCUGAUUGGCAGGCU-----UUGUCAUUAGGCCGCUUGAUUAGCGCC-- ..(----((((((((....))))).))))..(((((((...((.....(((((((.....))))))).-----..(((....))).))..)))))))...-- ( -20.90) >DroYak_CAF1 20529 91 + 1 GAA---------AAUUAUCAAAGUGCUAGAUGUAAGUUUCUUUUUAUUGGCCGUCUAAUUGGCAGGCUAUUCUAUGUCAUUAGGCCGCUUGAUUAGCGCC-- ...---------..........(((((((...(((((...........(((((((.....))).(((........)))....))))))))).))))))).-- ( -22.30) >DroAna_CAF1 26741 91 + 1 GAGUGGCU--GAUUUUAUUGG-CUGCUAUA--------CUUUUUUAUUGGUCGUCUAAUUGGCAACCGAUUCUAUGUCAUUAGGCCGCUUGAUUAGCGGCGC .((..((.--.((...))..)-)..))...--------.......((((((.(((.....))).)))))).(((......)))((((((.....)))))).. ( -29.30) >consensus GAA____UGUAUUUUUAUUGAAGUGCUAGAUGUAAGUUUCUUUUUAUUGGUCGUCUAAUUGGCAGGCUAUUCUAUGUCAUUAGGCCGCUUGAUUAGCGCC__ ......................((((((((........))........(((.(((((((.((((..........))))))))))).)))....))))))... (-16.30 = -16.13 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:00 2006