Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,572,942 – 11,573,053 |
Length | 111 |
Max. P | 0.699128 |
Location | 11,572,942 – 11,573,053 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 77.18 |
Mean single sequence MFE | -42.35 |
Consensus MFE | -21.62 |
Energy contribution | -22.35 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.33 |
Mean z-score | -1.92 |
Structure conservation index | 0.51 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699128 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11572942 111 + 22224390 CAUCAUCUAUUUCCUGGCCCAGGGCAUCUUUAUGUGGUUCCCAACCAUCCUGGAUGAGCUGGGCACACGUAAUGGCGAAAAUACGCUACUCUGCACUGUCCUGCAGGGUUU ........(((.(.((((((((..(((((....(((((.....)))))...)))))..)))))).)).).)))((((......))))((((((((......)))))))).. ( -38.30) >DroVir_CAF1 18264 111 + 1 CCUCAUCUACGGCAUCGCCCAGGGCAUCUUCAUGUGGUUCCCCACCAUACUCAACGAGCUGGGCAAGCAGAGCGCCCACGGCUCGCUGCUCUGCACCGUGCUACAGGGCUU (((....(((((....((((((..........((((((.....))))))(((...)))))))))..((((((((((...))).....))))))).)))))....))).... ( -40.20) >DroPse_CAF1 17125 111 + 1 CCUCAUCUACGGCAUGGCGCAGGGCAUCUUCAUGUGGUUCCCCACUAUUCUUGAUGAGCUGGGAUCGCGGGGCGGACAGGCAACGCUGCUCUGCCAAGUGCUGGAGGAGUU ((((.....(((((((((.(((..((((.....((((....)))).......))))..))).).))(((((((((...(....).)))))))))...)))))))))).... ( -42.80) >DroGri_CAF1 19695 111 + 1 CAUCAUCUAUGGCAUUGCCCAGGGCAUAUUCAUGUGGUUCCCCACCAUACUCAACGAGCUGGGCAAGCACAGUGGUGAGGGCUCAUUGCUCUGCACCAUCUUGCAAGGCUU ..........(((.((((((((..........((((((.....))))))(((...)))))))))))(((..(((((((((((.....))))).))))))..)))...))). ( -42.20) >DroAna_CAF1 18112 111 + 1 CCUCAUCUACUUCCUGGCCCAGGGCAUCUUUAUGUGGUUCCCCACCAUCCUGGAUGAGCUGGGCACGCGUGGUGGCGAGGACACGCUCCUCUGCAGUGUCCUCCAGGGUCU ...........(((((((((((..(((((....(((((.....)))))...)))))..))))))..((......))((((((((((......)).)))))))))))))... ( -47.80) >DroPer_CAF1 17502 111 + 1 CCUCAUCUACGGCAUGGCGCAGGGCAUCUUCAUGUGGUUCCCCACUAUUCUUGAUGAGCUGGGAUCGCGGGGCGGACAGGCAACGCUGCUCUGCCAAGUGCUGGAGGAGUU ((((.....(((((((((.(((..((((.....((((....)))).......))))..))).).))(((((((((...(....).)))))))))...)))))))))).... ( -42.80) >consensus CCUCAUCUACGGCAUGGCCCAGGGCAUCUUCAUGUGGUUCCCCACCAUACUCGAUGAGCUGGGCACGCGGAGCGGCCAGGACACGCUGCUCUGCACAGUCCUGCAGGGCUU .....(((........((((((..((((.....(((((.....)))))....))))..))))))..(((.((((((........)))))).)))...........)))... (-21.62 = -22.35 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:58 2006