Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,570,774 – 11,570,864 |
Length | 90 |
Max. P | 0.571337 |
Location | 11,570,774 – 11,570,864 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 92.04 |
Mean single sequence MFE | -29.92 |
Consensus MFE | -25.42 |
Energy contribution | -26.82 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.26 |
Structure conservation index | 0.85 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571337 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11570774 90 - 22224390 -GAAUCAGGAUUGGAGGAGUGACGCCUAACCGGGUCAAGUGGUCGUCGACGGCGUCGAAGAACGCAGCACGUGAUGCGGAUCCGAUUGGAA -...((..(((((((((.......))...(((.((((.((((((...))).((((......))))..))).)))).))).))))))).)). ( -27.70) >DroSec_CAF1 12266 90 - 1 -GAAUCAGGAUUGGAGGAGUGACGCCUAACCGGGUCAAGUGGUCGUCGAUGGCGUCCAAGAACGCAGCACGUGAUGCGGAUCCGGUUGGAA -........................(((((((((((...(((.(((.....))).)))....((((........))))))))))))))).. ( -31.80) >DroSim_CAF1 13336 90 - 1 -GAAUCAGGAUUGGAGGAGUGACGCCUAACCGGGUCAAGUGGUCGUCGACGGCGUCCAAGAACGCAGCACGUGAUGCGGAUCCGGUUGGAA -........................(((((((((((...(((.(((.....))).)))....((((........))))))))))))))).. ( -31.80) >DroEre_CAF1 11987 90 - 1 -GAAUCAGGAUUGGAGCAAUGACGACUAACCGGGUCAAGUGGUCGUCGACGGCGUCCAAGAACGCAGCACGUGAUGCGGAUCCGGUUGGAA -........................(((((((((((...(((.(((.....))).)))....((((........))))))))))))))).. ( -32.00) >DroYak_CAF1 12563 81 - 1 GGAAUCAGGAUUGGAGGAGUGACGACUAACCGGGUCGAGUGGUCGUC----------AAGAACGCAGCACGUGAUGCGGAUCCGGUUGGAA ....((..(((((((....(((((((((..((...))..))))))))----------)....((((........))))..))))))).)). ( -26.30) >consensus _GAAUCAGGAUUGGAGGAGUGACGCCUAACCGGGUCAAGUGGUCGUCGACGGCGUCCAAGAACGCAGCACGUGAUGCGGAUCCGGUUGGAA .........................(((((((((((...(((.(((.....))).)))....((((........))))))))))))))).. (-25.42 = -26.82 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:57 2006