Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,570,193 – 11,570,313 |
Length | 120 |
Max. P | 0.567247 |
Location | 11,570,193 – 11,570,313 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.94 |
Mean single sequence MFE | -41.13 |
Consensus MFE | -30.76 |
Energy contribution | -31.35 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.40 |
Mean z-score | -2.04 |
Structure conservation index | 0.75 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567247 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11570193 120 - 22224390 ACCCUGUUGCUCUACAUGGGCGGCGUUAGCGGCAUGGGCUUGACUCUGGCUGUCUACUACCUGUUCAUCUGGGAUUCACGCAUGCCGCCGCUGCCCGUGUUCAAGCACACGCAUCCGAUU .....((((((..((((((((((((...((((((((.(...((..(..(.((...((.....)).)).)..)..))..).))))))))))))))))))))...)))).)).......... ( -49.30) >DroVir_CAF1 15538 120 - 1 ACCCUAAUCCUCUAUAUGGGCGGCGUCAGCGGCAUGGGCCUAACGCUGGCCAUGUACUAUCUAUUCAUCUGGGACUCACGCAUGCCGCCGCUGCCCGUCUUCAAGCAUACGCAUCCAAUU ...............((((((((((...((((((((((((.......))))........((((......)))).......))))))))))))))))))......((....))........ ( -42.50) >DroGri_CAF1 15946 120 - 1 ACCCUAAUGCUCUACAUGGGCGGUGUCAGCGGCAUGGGCCUAACUCUGGCCAUGUACUAUAUGUUCAUCUGGGACUCACGGAUGCCACCGCUGCCAGUGUUCAAGCAUACGCAUCCCAUU ......(((((.....((((((.((.(((((((((((.((.......)))))))...........((((((.......))))))...)))))).)).)))))))))))............ ( -38.40) >DroWil_CAF1 37019 120 - 1 ACACUGAUCCUCUAUAUGGGCGGAGUCAGUGGAAUGGGAUUAACGCUAGCCAUGUAUUACUUUUUCAUCUGGGAUUCACGUAUGCCGCCAUUGCCCAUAUUCAAGCAUACGCAUCCCAUU .(((((((((.((.....)).))).))))))..(((..(.(((..(.......)..)))...)..))).((((((...(((((((...................))))))).)))))).. ( -30.91) >DroMoj_CAF1 16616 120 - 1 ACCCUGGUGCUCUAUAUGGGCGGUGUCAGCGGCAUGGGUCUAACCCUGGCCAUGUACUAUCUGUUCAUCUGGGACUCGCGUAUGCCGCCGCUGCCCAUCUUCAAGCAUACGCAUCCCAUU ......(((((....((((((((((...((((((((.((.....((..(..(((.((.....)).))))..))....)).)))))))))))))))))).....)))))............ ( -44.20) >DroAna_CAF1 15117 120 - 1 ACCCUGAUGCUCUACAUGGGCGGGGUCAGUGGCAUGGGCCUAACCCUGGCGGUCUACUAUCUCUUUAUCUGGGACUCUCGGAUGCCGCCACUGCCCGUCUUCAAGCACACCCAUCCCAUC ....((.((((......(((((((..(((((((..(((.....))).((((.(((....((((.......)))).....)))))))))))))))))))))...))))))........... ( -41.50) >consensus ACCCUGAUGCUCUACAUGGGCGGCGUCAGCGGCAUGGGCCUAACCCUGGCCAUGUACUAUCUGUUCAUCUGGGACUCACGCAUGCCGCCGCUGCCCGUCUUCAAGCAUACGCAUCCCAUU ......(((((....((((((((((...((((((((((((.......))))........(((........))).......)))))))))))))))))).....)))))............ (-30.76 = -31.35 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:56 2006