Locus 439

Sequence ID X_DroMel_CAF1
Location 1,292,937 – 1,293,027
Length 90
Max. P 0.773667
window675

overview

Window 5

Location 1,292,937 – 1,293,027
Length 90
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 64.01
Mean single sequence MFE -38.75
Consensus MFE -10.67
Energy contribution -11.71
Covariance contribution 1.04
Combinations/Pair 1.59
Mean z-score -2.18
Structure conservation index 0.28
SVM decision value 0.54
SVM RNA-class probability 0.773667
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1292937 90 - 22224390
GGCAGCUCGC-CUAAAGCUUCAGCGUUGGCGUCU---UUGGGGGCAUCCUUGGUAGCUGAGGCAAG-GAUGGUAUCGAUU---------GCCAAUGGAGCUGCU
((((((((((-.....)).....((((((((...---(((..(.((((((((.(......).))))-)))).)..))).)---------))))))))))))))) ( -40.90)
>DroSec_CAF1 25571 92 - 1
GGCAGCUCGCCCUAAAACCUCAGCGUUGGCGUCU---UUGGGGGCAUCUUUGGUGGCGGAGGCAAGGGAUGGUAUCGAUU---------GCCAAUGGAGCUGCU
((((((((((((((((.((((((((....)))..---.))))).....))))).)))...(((((..(((...)))..))---------)))....)))))))) ( -38.40)
>DroEre_CAF1 27117 90 - 1
GGUAGCUCAC-CUAGAACCUCGGCAUUGGCGUCU---UUAAGGGCAUCCUUGGUGGUUGCGGCAAG-GAUGGCCUCGAUU---------GCCGAAGGAGCUGCU
((((((((.(-(.((...)).))..((((((...---(..(((.((((((((.((....)).))))-)))).)))..).)---------)))))..)))))))) ( -40.60)
>DroWil_CAF1 73126 87 - 1
UGGGGCUCGG-CAAGAAC---G-----GGUAUCU---UGGUGGCCACUAUUGG-GACAAAGGCAAC-GUCCGCAGCGGCAAUAGAAGCUG---CUAAAGCUGGU
((((((.((.-(((((..---.-----....)))---)).))))).)))...(-(((...(....)-))))((((((((.......))))---))...)).... ( -28.10)
>DroYak_CAF1 26176 90 - 1
GGCAGCUCAC-CUAAAACCUCGGCCUUGGCGUCU---UUGGGGACAUCCUUGGUGGCUGCGGCUAG-GAUGGCAUCGAUU---------GCCAGGGGAGUUGCU
((((((((.(-((....(((.((((...(((((.---(..(((....)))..).))).))))))))-).(((((.....)---------))))))))))))))) ( -42.00)
>DroAna_CAF1 22293 93 - 1
GCCUGCUCCC-CUGUGACCUCCACCUGGGCGGCUGCCUGAGGCGCCUCUUUGGUGACGAGGCCCAG-GAUAGCAUCGAUG---------GCAGCCGGGGCCGUC
((((....((-(.(((.....)))..)))(((((((((((.((.((((((((....)))))...))-)...)).)))..)---------))))))))))).... ( -42.50)
>consensus
GGCAGCUCGC_CUAAAACCUCGGCCUUGGCGUCU___UUGGGGGCAUCCUUGGUGGCUGAGGCAAG_GAUGGCAUCGAUU_________GCCAAUGGAGCUGCU
((((((((......................((((...((((((....))))))......))))......((((................))))...)))))))) (-10.67 = -11.71 +   1.04) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:35 2006