Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,552,842 – 11,552,962 |
Length | 120 |
Max. P | 0.554831 |
Location | 11,552,842 – 11,552,962 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -45.73 |
Consensus MFE | -44.75 |
Energy contribution | -44.53 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.44 |
Structure conservation index | 0.98 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11552842 120 + 22224390 GCCGGCGACGUCCGUGCUCUCUGCCGCCGCUCUGCCAUCGCCUCUGCCGCUGCGUUUAUGCGCAGUGCGUCAUUACACGAAUACCUGUUUAAAGCGGAGGCAUAAACGCGGCUUUGUCGA ((((((((((..((.((.....)))).)).)).)))...((((((((((((((((....))))))))(((......)))..............))))))))........)))........ ( -45.00) >DroSec_CAF1 19055 120 + 1 GCCGGCGACGUCCGUGCUCUCUGCCGCCGCUCUGCCAUCGUCUCUGCCGCUGCGUUUAUGCGCAGUGCGUCAUUACACGAAUACCUGUUCAAAGCGGAGGCAUAAACGCGGCUUUGUCGA ..((((((.(.(((((.....((((.(((((.((.((((((...(((((((((((....)))))))).).))....)))).....))..)).))))).))))....)))))).)))))). ( -46.10) >DroSim_CAF1 19688 120 + 1 GCCGGCGACGUCCGUGCUCUCUGCCGCCGCUCUGCCAUCGUCUCUGCCGCUGCGUUUAUGCGCAGUGCGUCAUUACACGAAUACCUGUUCAAAGCGGAGGCAUAAACGCGGCUUUGUCGA ..((((((.(.(((((.....((((.(((((.((.((((((...(((((((((((....)))))))).).))....)))).....))..)).))))).))))....)))))).)))))). ( -46.10) >consensus GCCGGCGACGUCCGUGCUCUCUGCCGCCGCUCUGCCAUCGUCUCUGCCGCUGCGUUUAUGCGCAGUGCGUCAUUACACGAAUACCUGUUCAAAGCGGAGGCAUAAACGCGGCUUUGUCGA ..((((((.(.(((((.....((((.(((((..............((((((((((....)))))))).))........((((....))))..))))).))))....)))))).)))))). (-44.75 = -44.53 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:45 2006