Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,539,273 – 11,539,372 |
Length | 99 |
Max. P | 0.885597 |
Location | 11,539,273 – 11,539,372 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 97.17 |
Mean single sequence MFE | -16.74 |
Consensus MFE | -15.98 |
Energy contribution | -16.18 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.35 |
Structure conservation index | 0.95 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885597 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11539273 99 - 22224390 AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGUAUAACCCACGCGGCUGUCAAAAAACGUUAGCAAAAACGAAAAAUUCCAUACAAAA ...........((..(((((.(((((((..(((........))).....)))))))))))).......((((......)))).......))........ ( -16.90) >DroSec_CAF1 5093 99 - 1 AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGUAAAACCCACGCGGCUGUCAAAAAACGUUAGCAAAAACGAAAAAUUCCAUACAAAA ...........((..(((((.(((((((..(((........))).....)))))))))))).......((((......)))).......))........ ( -16.90) >DroSim_CAF1 5165 99 - 1 AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGUAUAACCCACGCGGCUGUCAAAAAACGUUAGCAAAAACGAAAAAUUCCAUACAAAA ...........((..(((((.(((((((..(((........))).....)))))))))))).......((((......)))).......))........ ( -16.90) >DroEre_CAF1 5214 99 - 1 AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGUAUAGCCCACGCGGCAGUCGAAGAACGUUAGCAAAAACGAAAAAUUCCAUACGAAA .........(((......((.((((((((.(((........)))...).)))))))))..........((((......))))............))).. ( -16.20) >DroYak_CAF1 5107 99 - 1 AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGCAUAACCCACGCGGCUGUCAAAAAACGUUAGCAAAAACGAAAAAUUCCAUACAAAA ...........((..(((((.(((((((...(((.....))).......)))))))))))).......((((......)))).......))........ ( -16.80) >consensus AGAAAUUAAUCGGUAAUAGUACGUGUGGCAACUAAAUAUUAGGUAUAACCCACGCGGCUGUCAAAAAACGUUAGCAAAAACGAAAAAUUCCAUACAAAA ...........((..(((((.(((((((...(((.....))).......)))))))))))).......((((......)))).......))........ (-15.98 = -16.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:43 2006