Locus 4384

Sequence ID X_DroMel_CAF1
Location 11,535,553 – 11,535,672
Length 119
Max. P 0.731840
window7202

overview

Window 2

Location 11,535,553 – 11,535,672
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.50
Mean single sequence MFE -25.48
Consensus MFE -17.34
Energy contribution -19.22
Covariance contribution 1.88
Combinations/Pair 1.07
Mean z-score -2.16
Structure conservation index 0.68
SVM decision value 0.43
SVM RNA-class probability 0.731840
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 11535553 119 - 22224390
AAAAUUAGCUGUUAACAUAAGCAAUUUAGUAAUUUGAGCAGACAAUUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUGCUUCUAUAAUUUAAGUGAGCCAAAA-AAAGGUGU
.(((((((((.........))).....((((((((((((..((((...((((((((.....))))))))...))))))))))))))))....))))))......(((....-...))).. ( -28.70)
>DroSec_CAF1 1354 120 - 1
AAAACUAGCUGUUAACAUGAGCAAUUUAGUAAUUUGAGCAGACAAUUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUACCUCUAUAAUUUACGUGAGCCAAAAAAAAGGUGU
.......(((.........)))......(((((((((((..((((...((((((((.....))))))))...))))))))))))))).................(((........))).. ( -25.80)
>DroSim_CAF1 1395 119 - 1
AAAACUAGCUGUUAACAUGAGCAAUUUAGUAAUUUGAGCAGACAACUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUACUUCUAUAAUUUACGUGAGCCAAAA-AAAGGUGU
...............((((...((((.((((((((((((..((((...((((((((.....))))))))...)))))))))))))))).....))))..)))).(((....-...))).. ( -26.60)
>DroEre_CAF1 1511 117 - 1
AACACUAGCCAUUAACAUAAGCAGUUU-GUAAUUCGAGCAGACAAUUCGCAUUACAAUAAACAUUAUACUUCUUGUGCUUAAAUUACGUCUUUGAAUUACGUGAGCCAAAG--GAGAUGU
...........((((((((((.(((((-(((((.((((.......)))).)))))))..........))).)))))).))))...((((((((......(....).....)--))))))) ( -21.80)
>DroYak_CAF1 1348 118 - 1
AACACUUGUUAUUACCAUAAGCAAUUUGGUAAUUCGAGCAGAAAAUUCGUAUUACAAUAUAUCUGAUACUUUUCGUGCUUAAAUUACUUCUUCGAAUUACUCGAGCCAAAA--AAGGUGU
.((((((....................(((((((..(((((((((...((((((.........))))))))))).))))..)))))))..(((((.....)))))......--.)))))) ( -24.50)
>consensus
AAAACUAGCUGUUAACAUAAGCAAUUUAGUAAUUUGAGCAGACAAUUCGUAUUACAAUAAAUGUGAUACUUUUUGUGCUUAAAUUACUUCUAUAAUUUACGUGAGCCAAAA_AAAGGUGU
.......(((.........)))......((((((((((((..(((...((((((((.....))))))))...))))))))))))))).................(((........))).. (-17.34 = -19.22 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:41 2006