Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,526,355 – 11,526,460 |
Length | 105 |
Max. P | 0.735916 |
Location | 11,526,355 – 11,526,460 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 81.72 |
Mean single sequence MFE | -22.96 |
Consensus MFE | -17.34 |
Energy contribution | -18.98 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.05 |
Mean z-score | -1.71 |
Structure conservation index | 0.76 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11526355 105 - 22224390 AUUUAGCGGUCCAGAAAUCACCGAAUAU----AUAUCCGAAACUAAGUAGUUUCUCUGCUAGCCAUAA---AAAUUCAAGGUUAGACGAAAGCAUUGGACCAAUG----C-CUUGUU .......(((((((..............----......((((((....))))))((..((((((....---........))))))..)).....)))))))....----.-...... ( -23.70) >DroSec_CAF1 7616 109 - 1 AUUUAGCGGUCCAGAAAUCAUUGAAUAUACAUAUGUUCGAAACUAAGUAGUUUCUCUGCUAGCCAUAA---AAAUUCAAGGUUAGACGAAAGCAUUGGACCAAUA----C-CUUGUU .......(((((((........((((((....))))))((((((....))))))((..((((((....---........))))))..)).....)))))))....----.-...... ( -26.70) >DroSim_CAF1 8759 109 - 1 AUUUAGCGGUCCAGAAAUCAUUGAAUAUACAUAUAUUCGAAACUAAGUAGUUUCUCUGCUAGCCAUAA---AAAUUCAAGGUUAGACGAAAGCAUUGGACCAAUG----C-CUUGUU .......(((((((........((((((....))))))((((((....))))))((..((((((....---........))))))..)).....)))))))....----.-...... ( -26.70) >DroEre_CAF1 7451 104 - 1 AU-UAGCGGUCCACAAAUCACCGAAUAUACA----GCCGAAACUAAGUAGUUUCUCUGCUUGCCAUAA----AAUUCAAGGUUAGACGAAAGCAUUGGACCAAUG----CCUAUGUU ..-....((((((................((----(..((((((....)))))).)))((.(((....----.......))).)).(....)...))))))....----........ ( -19.70) >DroYak_CAF1 8039 97 - 1 AUUUAGCGGUCCACAAAUCACCGAAUAU--------------------AGUUUCUUAGCUUGCCAUUAAACAAAUUCAAGGUUAGACGUAAGCAUUGGACCAAUUAUAAACCUUGUU .......((((((.........(((...--------------------...)))...((((((..((((.(........).))))..))))))..))))))................ ( -18.00) >consensus AUUUAGCGGUCCAGAAAUCACCGAAUAUACA_AU_UCCGAAACUAAGUAGUUUCUCUGCUAGCCAUAA___AAAUUCAAGGUUAGACGAAAGCAUUGGACCAAUG____C_CUUGUU .......((((((.........................((((((....))))))((..((((((...............))))))..))......))))))................ (-17.34 = -18.98 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:34 2006