Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,522,996 – 11,523,146 |
Length | 150 |
Max. P | 0.861923 |
Location | 11,522,996 – 11,523,106 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.57 |
Mean single sequence MFE | -37.37 |
Consensus MFE | -18.98 |
Energy contribution | -21.85 |
Covariance contribution | 2.87 |
Combinations/Pair | 1.07 |
Mean z-score | -2.67 |
Structure conservation index | 0.51 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861923 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11522996 110 + 22224390 ACAGUCGGUUAAUCACAACAAUACGGCGAUCUGGCAGAUCAGUUGGGGGGAUCUGCCACU------GCCACUGCCAUUGCUGGUGC----UAUUGCUUUAGGAAGUGGCAAACCCCUAAU ...((((................))))((((.....)))).((((((((....(((((((------.((...((((....))))((----....))....)).)))))))..)))))))) ( -38.89) >DroSec_CAF1 4387 110 + 1 ACAGUCGGUUAAUCACAACAAUACGGCGAUCUGGCAGAUCAGUUGGGGGGAUCUGCCACU------GCCACUGCCAUUGCUGGUGC----UAUUGCUUUAGGAAGUGGCAAACCCCUAAU ...((((................))))((((.....)))).((((((((....(((((((------.((...((((....))))((----....))....)).)))))))..)))))))) ( -38.89) >DroSim_CAF1 5926 98 + 1 ACAGUCGGUUAAUCACAACAAUACGGCGAUCUGGCAGAUCAGUUGGGGGGAUCUG------------------CCAUUGCUGGUGC----UAUUGCUUUAGGAAGUGGCAAACCCCUAAU ...((((................))))((((.....)))).((((((((....((------------------(((((.((((.((----....)).))))..)))))))..)))))))) ( -33.79) >DroYak_CAF1 4712 108 + 1 --------UUAAUU--AACAAUUCAGCGAUUUGGCAGAUCAACUAU--GCAUCUGCCACUGUCAUUGCCACUGCCAUUGGUGGUGCGCUACACUGCUGUAGGAAGUGGCAAACCCCUAAU --------......--...........(((.((((((((((....)--).))))))))..))).((((((((.((..(((..(((.....)))..)))..)).))))))))......... ( -37.90) >consensus ACAGUCGGUUAAUCACAACAAUACGGCGAUCUGGCAGAUCAGUUGGGGGGAUCUGCCACU______GCCACUGCCAUUGCUGGUGC____UAUUGCUUUAGGAAGUGGCAAACCCCUAAU ......((((.....................(((((((((.........)))))))))........((((((.(((..((.((((.....))))))..).)).)))))).))))...... (-18.98 = -21.85 + 2.87)
Location | 11,522,996 – 11,523,106 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.57 |
Mean single sequence MFE | -33.84 |
Consensus MFE | -22.29 |
Energy contribution | -23.60 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.92 |
Structure conservation index | 0.66 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.825057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11522996 110 - 22224390 AUUAGGGGUUUGCCACUUCCUAAAGCAAUA----GCACCAGCAAUGGCAGUGGC------AGUGGCAGAUCCCCCCAACUGAUCUGCCAGAUCGCCGUAUUGUUGUGAUUAACCGACUGU ..(((.(((((((((((.......((....----)).(((....))).))))))------).(((((((((.........)))))))))((((((.........))))))))))..))). ( -36.70) >DroSec_CAF1 4387 110 - 1 AUUAGGGGUUUGCCACUUCCUAAAGCAAUA----GCACCAGCAAUGGCAGUGGC------AGUGGCAGAUCCCCCCAACUGAUCUGCCAGAUCGCCGUAUUGUUGUGAUUAACCGACUGU ..(((.(((((((((((.......((....----)).(((....))).))))))------).(((((((((.........)))))))))((((((.........))))))))))..))). ( -36.70) >DroSim_CAF1 5926 98 - 1 AUUAGGGGUUUGCCACUUCCUAAAGCAAUA----GCACCAGCAAUGG------------------CAGAUCCCCCCAACUGAUCUGCCAGAUCGCCGUAUUGUUGUGAUUAACCGACUGU .(((((((........))))))).((((((----(.((..((..(((------------------((((((.........)))))))))....)).)).))))))).............. ( -26.30) >DroYak_CAF1 4712 108 - 1 AUUAGGGGUUUGCCACUUCCUACAGCAGUGUAGCGCACCACCAAUGGCAGUGGCAAUGACAGUGGCAGAUGC--AUAGUUGAUCUGCCAAAUCGCUGAAUUGUU--AAUUAA-------- .((((.(((((((((((.((.......(((.....))).......)).))))))).......((((((((.(--(....)))))))))))))).))))......--......-------- ( -35.64) >consensus AUUAGGGGUUUGCCACUUCCUAAAGCAAUA____GCACCAGCAAUGGCAGUGGC______AGUGGCAGAUCCCCCCAACUGAUCUGCCAGAUCGCCGUAUUGUUGUGAUUAACCGACUGU .(((((((........)))))))(((((((....((.(((....)))...............(((((((((.........)))))))))....))..)))))))................ (-22.29 = -23.60 + 1.31)
Location | 11,523,036 – 11,523,146 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.37 |
Mean single sequence MFE | -32.11 |
Consensus MFE | -21.16 |
Energy contribution | -23.46 |
Covariance contribution | 2.30 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.66 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11523036 110 - 22224390 CAUCGAACUAUUCGCAGCUGUGAUGCAAGCUUCGAUCUCUAUUAGGGGUUUGCCACUUCCUAAAGCAAUA----GCACCAGCAAUGGCAGUGGC------AGUGGCAGAUCCCCCCAACU .((((((((..((((....))))....)).))))))........(((((((((((((.((....((....----)).(((....)))....)).------)))))))))))))....... ( -39.30) >DroSec_CAF1 4427 110 - 1 CAUCGAACUAUUCGCAGCUGUGAUGCAAGCCUCGAUCUCUAUUAGGGGUUUGCCACUUCCUAAAGCAAUA----GCACCAGCAAUGGCAGUGGC------AGUGGCAGAUCCCCCCAACU .(((((.((..((((....))))....))..)))))........(((((((((((((.((....((....----)).(((....)))....)).------)))))))))))))....... ( -37.50) >DroSim_CAF1 5966 98 - 1 CAUCGAACUAUUCGCAGCUGUGAUGCAAGCCUCGAUCUCUAUUAGGGGUUUGCCACUUCCUAAAGCAAUA----GCACCAGCAAUGG------------------CAGAUCCCCCCAACU .(((((.((..((((....))))....))..)))))........(((((((((((.((.((...((....----))...)).)))))------------------))))))))....... ( -25.70) >DroEre_CAF1 4406 85 - 1 CAUCGAACUAUUCGCAGCCGUGAUGCAAGUCUCGAUCUCUAUUAGGGGUUUGCCACUUCCUAAAGCAAAG----GCAC---------------------CAGUGGCAGAU---------- .((((((((..((((....))))....))).)))))(((.....)))((((((((((.(((.......))----)...---------------------.))))))))))---------- ( -23.60) >DroYak_CAF1 4742 118 - 1 CAUCGAACUAUUCGCAGCUGUGAUGCAAGCUUCGAUCUCUAUUAGGGGUUUGCCACUUCCUACAGCAGUGUAGCGCACCACCAAUGGCAGUGGCAAUGACAGUGGCAGAUGC--AUAGUU .....((((((..(((.((((.((.((......((((((.....))))))(((((((.((.......(((.....))).......)).))))))).))...)).)))).)))--)))))) ( -34.44) >consensus CAUCGAACUAUUCGCAGCUGUGAUGCAAGCCUCGAUCUCUAUUAGGGGUUUGCCACUUCCUAAAGCAAUA____GCACCAGCAAUGGCAGUGGC______AGUGGCAGAUCCCCCCAACU .(((((.....((((....))))........)))))........(((((((((((((.......((........)).(((....))).............)))))))))))))....... (-21.16 = -23.46 + 2.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:33 2006