Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,514,129 – 11,514,238 |
Length | 109 |
Max. P | 0.807404 |
Location | 11,514,129 – 11,514,238 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.48 |
Mean single sequence MFE | -24.95 |
Consensus MFE | -15.71 |
Energy contribution | -16.78 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.93 |
Structure conservation index | 0.63 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807404 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11514129 109 - 22224390 -----------UCCUUUCGCUGUGAGUAACAUCGCAUGCCGAUUAAAUCAAGUGAAUAUGGAAACACGACUCUUUUCUCAUUGUGUGUUUAUGUUUAAACAUUAACUUCGGUGUUUUUCA -----------.........(((((......))))).(((((..........((((((((((.((((((...........)))))).))))))))))..........)))))........ ( -22.95) >DroSec_CAF1 12281 106 - 1 CCAA--ACACUUCUUUU------------CAUCGCAUGCCGAUUAAAUCAAGUGAAUAUGGAAACACGACUCUUUUCACUUUGUGUGUUUAUGUUUAAACAUUAACUUCGGUGUUUUGCA ....--...........------------....(((.(((((..........((((((((((.((((((...........)))))).))))))))))..........)))))....))). ( -21.85) >DroEre_CAF1 35509 117 - 1 CUAA--AACC-UUCUUUCGCUGUUACUAAAAUCGCAUGCCGAUAAACGUAAGUGAAAAUGGAAACACGACUCUUUUGUCUUUGUGUGUUUUUGUUUAAACAUUUACUUCGGUGUUUUACA .(((--(((.-.......((.(((.....))).))..(((((.....(((((((.(((..((((((((((......))).....)))))))..)))...))))))).))))))))))).. ( -27.20) >DroYak_CAF1 35291 119 - 1 CUAAAAAACC-CUCCUUCUCUGUGAGUAAAAUCGCAUACCGACAAACGUAAGUGAAAAUGGAAACACGACUCUUUUGUCUCUGUGUGUUUUUGUUUAAACAUUUACUUCGGUGUUUAACA ..........-..........((((......))))(((((((.....(((((((.(((..((((((((((......))).....)))))))..)))...))))))).)))))))...... ( -27.80) >consensus CUAA__AACC_UCCUUUCGCUGUGAGUAAAAUCGCAUGCCGAUAAAAGCAAGUGAAAAUGGAAACACGACUCUUUUCUCUUUGUGUGUUUAUGUUUAAACAUUAACUUCGGUGUUUUACA ...................................(((((((..........((((((((((.((((((...........)))))).))))))))))..........)))))))...... (-15.71 = -16.78 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:30 2006