Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,508,457 – 11,508,577 |
Length | 120 |
Max. P | 0.649733 |
Location | 11,508,457 – 11,508,577 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 83.83 |
Mean single sequence MFE | -49.92 |
Consensus MFE | -34.07 |
Energy contribution | -34.10 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.35 |
Mean z-score | -2.44 |
Structure conservation index | 0.68 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.649733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11508457 120 + 22224390 GGGACAAGGAGAAGCUGGCCAACGAUACGGAUCGCAAGGUGACGUUUACGGGUCUGGUGCCUGGUCGAUUGUACAACAUCACAGUUUGGACUGUGAGCGGUGGUGUGGCCAGUUUGCCCA .......((..((((((((((.(((((((.(((....)))..)))...(((((.....)))))))))....(((.((.(((((((....)))))))...)).)))))))))))))..)). ( -46.20) >DroVir_CAF1 22617 120 + 1 AGGAAAAGGAGAAGCUGGCCAACGAUACGGACCGCAAGGUGACCUUCACCGGCCUGAUACCGGGCCGCCUCUACAACAUAACCGUGUGGACGGUGAGCGGCGGCGUCGCCAGUUUGCCGA .......((..((((((((..(((...((..((((..((((.....))))((((((....))))))(((((((((.(......))))))).)))..)))))).))).)))))))).)).. ( -51.50) >DroGri_CAF1 4917 120 + 1 AGGACAAGGAGAAAUUGGCCAAUGAUACCGAUCGGAAGGUGACCUUCACCGGUUUGAUACCCGGUCGCCUUUACAACAUCACCGUGUGGACGGUGAGCGGGGGUGUGGCCAGUUUACCAA .......((..((((((((((....((((.((((((.((((.....))))..)))))).((((.(((((((((((.(......))))))).))))).)))))))))))))))))).)).. ( -51.30) >DroWil_CAF1 5171 120 + 1 AGGAUAAAGAGAAACUGGCCAAUGAUACCGAUCGCAAGGUGACCUUCACGGGUCUUGUGCCCGGUCGCCUAUACAACAUUACCGUCUGGACUGUAAGUGGCGGUGUGGCCAGUUUGCCCA ...........((((((((((....(((((.((((.((((((((.....((((.....))))))))))))........((((.((....)).)))))))))))))))))))))))..... ( -46.20) >DroMoj_CAF1 19955 120 + 1 AGGAGAAGGAGAAGCUGGCCAACGAUACGGAUCGCAAGGUUACCUUCACCGGUCUGGUGCCGGGACGCCUCUACAACAUCACCGUCUGGACGGUGAGCGGAGGCGUUGCCAGUUUGCCGA .......((..((((((((....((....((((....))))....)).(((((.....)))))(((((((((......(((((((....)))))))..))))))))))))))))).)).. ( -53.70) >DroAna_CAF1 6086 120 + 1 GGGACAAGGAGAAGCUGGCCAACGACACCGACCGGAAGGUGACAUUCACGGGUCUAGUGCCCGGCCGGCUGUACAACAUUACGGUGUGGACGGUGAGCGGGGGAGUGGCCAGUCUGCCCA (((...((.....((((((((..(((.((((((....)))(.....).)))))).....(((.((..(((((...((((....))))..)))))..)).)))...)))))))))).))). ( -50.60) >consensus AGGACAAGGAGAAGCUGGCCAACGAUACCGAUCGCAAGGUGACCUUCACCGGUCUGGUGCCCGGUCGCCUCUACAACAUCACCGUGUGGACGGUGAGCGGCGGUGUGGCCAGUUUGCCCA .......((..((((((((((..((.....(((....))).....)).(((((.....)))))..((((....(....(((((((....)))))))...).)))))))))))))).)).. (-34.07 = -34.10 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:26 2006