| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 11,504,932 – 11,505,026 |
| Length | 94 |
| Max. P | 0.892216 |
| Location | 11,504,932 – 11,505,026 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 74.68 |
| Mean single sequence MFE | -13.82 |
| Consensus MFE | -10.35 |
| Energy contribution | -10.35 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11504932 94 + 22224390 AAAAUGAACUUAAAUUAACAACAC-G-UGACAAAAAGGUCGAAGGACGCGGCAUAAAGAAUUGCUGGACAUUAAGAUCCUAAGAGGUAAUAUCUGA-- .....((.(((((...........-.-..........(((....))).(((((........)))))....))))).))...(((.......)))..-- ( -14.30) >DroVir_CAF1 18565 85 + 1 ------AACUAA-ACUAAA-----UA-AAACACAAAGGUCGAAGGACGCGGCAUAAAGAAUUGCUGGACAUAAAAAUCUUGAGAGGUAAUGUAAUGUA ------......-......-----..-....(((...(((....))).(((((........))))).((((.(...((....))..).))))..))). ( -12.50) >DroPse_CAF1 3174 73 + 1 A-----AAC-------------AC-----ACUAAAAGGUCGAAGGACGCGGCACAAAGAGUUGCUGGACAUAAAGAUCCUAAGAGGUAAUAUUUAA-- .-----...-------------..-----(((.....(((....)))(((((.......))))).(((........))).....))).........-- ( -11.40) >DroSec_CAF1 2344 95 + 1 AACAUGAACUUAAAUUAAAAACAC-AACAACAAAAAGGUCGAAGGACGCGGCAUAAAGAAUUGCUGGACAUUAAGAUCCUAAGAGGUAAUAUCUAA-- .....((.(((((...........-............(((....))).(((((........)))))....))))).))...(((.......)))..-- ( -14.30) >DroAna_CAF1 2869 86 + 1 -------AAUUAAACCAAAAAUUA-A--UACGAAAAGGUCGAAGGACGCGGCACAAAGAGCUGCUGGACAUAAAGAUCCUGAGAGGUAAUAACUAA-- -------......(((........-.--.........(((....)))(((((.......))))).(((........))).....))).........-- ( -16.50) >DroPer_CAF1 3295 86 + 1 A-----AACACACACAAAAAACAC-----ACAAAAAGGUCGAAGGACGCGGCACAAAGAGUUGCUGGACAUAAAGAUCCUAAGAGGUAAUGUUUUA-- .-----...........((((((.-----........(((....)))(((((.......))))).(((........)))..........)))))).-- ( -13.90) >consensus A_____AACUUAAACUAAAAACAC_A___ACAAAAAGGUCGAAGGACGCGGCACAAAGAAUUGCUGGACAUAAAGAUCCUAAGAGGUAAUAUCUAA__ .....................................(((....))).(((((........)))))................................ (-10.35 = -10.35 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:24 2006