Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 11,504,067 – 11,504,163 |
Length | 96 |
Max. P | 0.943401 |
Location | 11,504,067 – 11,504,163 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 74.65 |
Mean single sequence MFE | -14.03 |
Consensus MFE | -11.30 |
Energy contribution | -11.63 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.39 |
Structure conservation index | 0.81 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.943401 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 11504067 96 - 22224390 AACCGAAUACGAGUUGCAAGUGCCACAAACUGCUAAUUGCAGUUCGAUAUUUCACAUUACCCCCCCCCCC--CCU-GACUUCAAACAGCCCCCUCGACA ...(((...(((..(((((..((........))...)))))..)))........................--.((-(........))).....)))... ( -14.80) >DroEre_CAF1 25771 80 - 1 AACCAAAUACGAGUUGCAAGUGCCACAAACUGCUAAUUGCAGUUCGAUAUUAGCCAUUAGCCCCUCAGAGCCC-------------------CUCGUCA ........(((((..((.(((.......)))((((((.(((((.....))).)).))))))........))..-------------------))))).. ( -15.60) >DroYak_CAF1 25447 87 - 1 AACCAAAUACGUGUUGCAAGUGCCACAAACUGCUAAUUGCAGUUCGAUAUUACACAUUUCCCCUCCACAGCCCCCU------------CACCCUCGUCA ..........((((.((....))..(.((((((.....)))))).).....)))).....................------------........... ( -11.70) >consensus AACCAAAUACGAGUUGCAAGUGCCACAAACUGCUAAUUGCAGUUCGAUAUUACACAUUACCCCCCCACAGCCCC______________C_CCCUCGUCA .....((((((((((((((..((........))...)))))))))).))))................................................ (-11.30 = -11.63 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:23 2006